Evidence map›Paper›PMID 40832988›Full record

Trial reportCancer research communications2025

Clinical Validity of FoundationOne Liquid CDx for Detection of BRAFV600E in Colorectal Cancer.

Rona Yaeger, Jean-François Martini, Lincoln Pasquina, Brian Tunquist, Xiaosong Zhang, Fatima Kaiser, Norberto Pantoja Galicia, Shibing Deng, Siliang Gong, Cui Guo and 5 more

Abstract readClinical Trial, Phase IIIRandomized Controlled TrialValidation Study
In one paragraph

Trial report in Cancer research communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Rona YaegerDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-7233-5454
Jean-François MartiniTranslational Science Operations, Pfizer, Inc., La Jolla, California.ORCID 0000-0001-8570-1401
Lincoln PasquinaClinical Development, Foundation Medicine Inc., Boston, Massachusetts.ORCID 0009-0009-5461-9777
Brian TunquistFormerly Pfizer, Inc., New York, New York.ORCID 0009-0001-9897-2806
Xiaosong ZhangGlobal Development, Pfizer, Inc., South San Francisco, California.ORCID 0009-0000-2415-5355
Fatima KaiserFormerly Foundation Medicine Inc., Boston, Massachusetts.ORCID 0009-0002-4061-3701
Norberto Pantoja GaliciaBiometrics, Foundation Medicine Inc., Boston, Massachusetts.ORCID 0000-0001-8614-5216
Shibing DengTranslational Science Operations, Pfizer, Inc., La Jolla, California.ORCID 0000-0002-2867-263X
Siliang GongFormerly Foundation Medicine Inc., Boston, Massachusetts.ORCID 0009-0002-8012-9551
Cui GuoBiometrics, Foundation Medicine Inc., Boston, Massachusetts.ORCID 0000-0002-3297-119X
Jimmy KielyBiometrics, Foundation Medicine Inc., Boston, Massachusetts.ORCID 0009-0009-3310-0837
Ta-Chou Vincent NgBiometrics, Foundation Medicine Inc., Boston, Massachusetts.ORCID 0000-0003-1446-5864
Graham FerrierGlobal Medical, Pfizer, Inc., New York, New York.ORCID 0009-0006-1760-4697
Josep TaberneroDepartment of Medical Oncology, Vall d'Hebron Hospital Campus and Vall d'Hebron Institute of Oncology (VHIO), University of Vic - Central University of Catalonia, Barcelona, Spain.ORCID 0000-0002-2495-8139
Scott KopetzDepartment of Gastrointestinal Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0001-9647-3416

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748Pfizer (Davis) N/A
6 · The paper itself

Abstract

purposeThe BRAF inhibitor encorafenib (Enco) plus the anti-EGFR antibody cetuximab (Cetux) improved overall survival, objective response rate, and progression-free survival in previously treated BRAFV600E-mutant metastatic colorectal cancer in BEACON, a phase III randomized trial, leading to regulatory approval for this indication. To support rapid, plasma-based testing for BRAFV600E identification, clinical validity of a ctDNA-based assay, FoundationOneLiquid CDx (F1LCDx), was assessed against the reference tumor-based clinical trial assay (CTA) in liquid biopsy-evaluable samples from BEACON and commercially obtained tissue-matched plasma samples. PATIENTS AND

methodsPretreatment tissue samples were collected in BEACON to confirm BRAF mutational status using the central single gene PCR assay. Concordance between the CTA and liquid biopsy tests was assessed, and clinical validity of liquid biopsy testing was examined using clinical outcomes from BEACON.

resultsOf the 523 evaluable patients, 433 with matched tissue and plasma samples had CTA and F1LCDx results available (BEACON, n = 328; commercial, n = 105). A strong concordance in detecting BRAFV600E was found between F1LCDx and CTA, with a positive percent agreement of 87.2% and negative percent agreement of 97.1%. Among 42 F1LCDx-/CTA+ samples, 41 (97.6%) had ctDNA tumor fraction <1%. Among samples with ctDNA tumor fraction >1%, the positive percent agreement was 99.4% and negative percent agreement was 86.7%. Clinical outcomes with Enco plus Cetux were similar between those identified as F1LCDx+/CTA+ and CTA+ overall.

conclusionsThis study supports using liquid biopsies as a clinically valid assay for identifying BRAFV600E alterations in patients with metastatic colorectal cancer, particularly when ctDNA tumor fraction was >1%. SIGNIFICANCE: In the phase III BEACON trial, which established Enco plus Cetux as a standard of care for previously treated BRAFV600E-mutant metastatic colorectal cancer, mutational status was confirmed through testing of tumor tissue. To support rapid, less invasive testing for BRAFV600E in plasma, this retrospective study assessed a ctDNA-based assay and found strong concordance between the liquid biopsy test and the tumor-based assay in detecting BRAFV600E.

Indexed as

Biomarkers, TumorCirculating Tumor DNAColorectal NeoplasmsProto-Oncogene Proteins B-rafAdultAgedAged, 80 and overAntineoplastic Combined Chemotherapy ProtocolsCarbamatesCetuximabFemaleHumansLiquid BiopsyMaleMiddle AgedMutationBiomarkers, TumorBRAF protein, humanCarbamatesCetuximabCirculating Tumor DNAencorafenibProto-Oncogene Proteins B-rafSulfonamides

Identifiers

PMID40832988
PMCPMC12417970

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.