Evidence map›Paper›PMID 40832337›Full record

ArticlebioRxiv : the preprint server for biology2025

A non-catalytic role for RFC in PCNA-mediated processive DNA synthesis.

Gabriella N L Chua, Emily C Beckwitt, Victoria Miller-Browne, Olga Yurieva, Dan Zhang, Bryce J Katch, John W Watters, Kaitlin Abrantes, Ryogo Funabiki, Xiaolan Zhao and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Gabriella N L ChuaLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-6849-1366
Emily C BeckwittLaboratory of DNA Replication, The Rockefeller University, New York, NY, USA.
Victoria Miller-BrowneMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Olga YurievaLaboratory of DNA Replication, The Rockefeller University, New York, NY, USA.
Dan ZhangLaboratory of DNA Replication, The Rockefeller University, New York, NY, USA.
Bryce J KatchLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
John W WattersLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Kaitlin AbrantesLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Ryogo FunabikiLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-8302-6905
Michael E O'DonnellLaboratory of DNA Replication, The Rockefeller University, New York, NY, USA.
Shixin LiuLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-4238-7066

Funding

Weill Cornell/Rockefeller/Sloan Kettering MST ProgramT32GM152349 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI KATHARINE C HSU · 2024 to 2026
$6.6M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Biochemistry of Eukaryotic Replication Fork and DNA RepairR35GM148159 · NIGMS · ROCKEFELLER UNIVERSITY · PI MICHAEL E O'DONNELL · 2023 to 2026
$1.7M
Biophysical Determinants of the Nucleosome as an Activity Center for Chromatin RegulatorsR01GM149862 · NIGMS · ROCKEFELLER UNIVERSITY · PI Shixin Liu · 2023 to 2026
$1.4M
Molecular Biophysics Training ProgramT32GM132081 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Olga Boudker, David Eliezer · 2020 to 2026
$1.3M
NIGMS NIH HHS R01 GM149862NIGMS NIH HHS R35 GM145260NIGMS NIH HHS R35 GM148159NIGMS NIH HHS T32 GM132081NIGMS NIH HHS T32 GM152349
6 · The paper itself

Abstract

The ring-shaped sliding clamp PCNA enables DNA polymerases to perform processive DNA synthesis during replication and repair. The loading of PCNA onto DNA is catalyzed by the ATPase clamp loader RFC. Using a single-molecule platform to visualize the dynamic interplay between PCNA and RFC on DNA, we unexpectedly discovered that RFC continues to associate with PCNA after loading, contrary to the conventional view. Functionally, this clamp-loader/clamp complex is required for processive DNA synthesis by polymerase δ (Polδ), as the PCNA-Polδ assembly is inherently unstable. This architectural role of RFC is dependent on the BRCT domain of Rfc1, and mutation of its DNA-binding residues causes sensitivity to DNA damage in vivo. We further showed the FEN1 flap endonuclease can also stabilize the PCNA-Polδ interaction and mediate robust synthesis. Overall, our work revealed that, beyond their canonical enzymatic functions, PCNA-binding proteins harbor non-catalytic functions essential for DNA replication and genome maintenance.

Indexed as

Clamp loaderDNA damageDNA replicationFEN1Fill-in synthesisGenome maintenanceOkazaki fragmentPCNAPolδRFCSliding clamp

Identifiers

PMID40832337
PMCPMC12363810

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.