Evidence map›Paper›PMID 40830829›Full record

ArticleBMC genomics2025

Genome-wide analysis of the DnaJ gene family and their expression profiles under salt stress in potato.

Qi Fu, Yanan Pu, Jintao Liu, Xuemei Wang, Dianjue Li, Guangtao Zhu

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qi Fu *Yunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China.
Yanan Pu *Yunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China.
Jintao LiuYunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China.
Xuemei WangYunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China.
Dianjue LiYunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China.
Guangtao ZhuYunnan Key Laboratory of Potato Biology, The AGISCAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, China. zhuguangtao@ynnu.edu.cn.

Funding

National Natural Science Foundation of China W2412007
6 · The paper itself

Abstract

backgroundSaline stress is one of the primary environmental factors affecting global food security, significantly jeopardizing crop quality and yield. DnaJ proteins (DnaJs) are a type of protein that plays an important role in dealing with salt stress for plants. Nevertheless, the comprehensive exploration of the DnaJ gene family and its role in salt stress in potato (Solanum tuberosum L.) is rare.

resultsA total of 113 StDnaJs were identified from the potato genome, and they were categorized into three distinct types, with the same type members possessing similar structures. Gene duplication analysis identified twenty-five pairs of duplicated genes, potentially contributing to the expansion of the StDnaJ family in potato. The promoters of StDnaJ genes contained numerous cis-acting regulatory elements linked to light response, plant growth, hormone response, and stress response. A heat map was generated using RNA-seq data, suggesting that they were expressed in roots or leaves under salt stress. We also selected 22 highly responsive members with continuous induction to validate their expression patterns using RT-qPCR, finding that they were significantly induced by salt stress in leaves or roots, with StDnaJ10, StDnaJ21, StDnaJ23, StDnaJ64, StDnaJ94, and StDnaJ107 being induced in both roots and leaves, indicating that these genes may play important roles in salt stress.

conclusionsThis study presents an extensive analysis of StDnaJs and provides targeted members for further salt-resistant research in potato.

Indexed as

Multigene FamilyPlant ProteinsSalt StressSolanum tuberosumGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantPhylogenyPromoter Regions, GeneticStress, PhysiologicalPlant ProteinsDnaJ gene familyExpression patternsPotatoSalt stress

Identifiers

PMID40830829
PMCPMC12363079

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.