Evidence map›Paper›PMID 40830162›Full record

ArticleScientific reports2025

Functional characterization of a novel plant growth-promoting rhizobacterium enhancing root growth and salt stress tolerance.

Sanghee Lee, Young Kook Kim, Hualin Nie, Jongmin Ahn, Nayoung Kim, Seo-Rin Ko, Ah-Hyeon Choi, Hayoung Kwon, Yuxin Peng, Suk-Yoon Kwon and 1 more

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Sanghee LeePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Young Kook KimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Hualin NiePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Jongmin AhnNatural Product Research Center, KRIBB, 30-Yeongudanji-ro, Ochang-eup, Cheongwongu, Cheongju-si, Chungbuk, 28116, Republic of Korea.
Nayoung KimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Seo-Rin KoPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Ah-Hyeon ChoiPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Hayoung KwonPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Yuxin PengBiological Resource Center, Korean Collection for Type Cultures (KCTC), KRIBB, Jeongeup, 56212, Republic of Korea.
Suk-Yoon KwonPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea. sykwon@kribb.re.kr.
Ah-Young ShinPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea. shinay@kribb.re.kr.

Funding

Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program KGM1002521National Research Foundation of Korea 2023R1A2C1006404
6 · The paper itself

Abstract

Plant growth-promoting rhizobacteria (PGPR) are soil microorganisms through which phytohormones and other bioactive compounds are produced, thereby enhancing plant growth and stress tolerance. In this study, a novel PGPR strain was identified from the rhizosphere of Lycium chinense seedlings, which produce protein-rich fruit. Whole-genome sequencing and annotation revealed that the genome of this strain, designated Pseudomonas sp. A-2, consists of a 6.65-Mb circular chromosome with 5,980 predicted protein-coding sequences. Comparative genomic analysis classified the strain within the genus Pseudomonas. The A-2 strain genome encodes proteins involved in indole-3-acetic acid (IAA) biosynthesis and signaling pathways, which was validated through IAA detection assays and quantitative analyses. Plant growth rates were significantly enhanced by the A-2 strain treatment, with increases of 3-fold in Arabidopsis, 1.5-fold in tobacco, and 1.35-fold in peanut. In Arabidopsis thaliana, expression of key genes associated with lateral and adventitious root formation was induced by the A-2 strain treatment, including ARFs, AMI1, TAA1, YUCs, IBRs, TOB1, and ECH2. Moreover, enhanced tolerance to salt stress was conferred by the A-2 strain treatment, as evidenced by improved biomass accumulation, chlorophyll content, antioxidant enzyme activity, and reduced lipid peroxidation. Levels of total soluble sugars, including trehalose, were elevated in the A-2 strain treated plants, suggesting a role in osmotic adjustment under stress. The plant growth-promoting and stress-alleviating properties of Pseudomonas sp. A-2 highlight its potential application as an effective biological agent for sustainable agriculture.

Indexed as

Plant DevelopmentPlant RootsPseudomonasSalt StressSalt ToleranceArabidopsisGene Expression Regulation, PlantIndoleacetic AcidsRhizosphereSoil Microbiologyindoleacetic acidIndoleacetic AcidsAdventitious rootsAuxinLateral rootsPlant growth–promoting rhizobacteria (PGPR)PseudomonasSalt stress toleranceWhole-genome sequencing (WGS)

Identifiers

PMID40830162
PMCPMC12365279

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.