Evidence map›Paper›PMID 40830099›Full record

ArticleNature communications2025

Structural elucidation of a unique binding mode by an intact alphavirus human IgG molecule to a quaternary epitope.

Abhishek Bandyopadhyay, Lauren E Williamson, Devika Sirohi, Kevin Bailey, Theron Gilliland, Thomas Klose, Geeta Buda, Andrew Trivette, Chengqun Sun, Justin G Julander and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Abhishek Bandyopadhyay *Department of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Lauren E Williamson *The Vanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.ORCID http://orcid.org/0000-0002-2725-5826
Devika SirohiDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Kevin BaileyInstitute for Antiviral Research, Utah State University, Logan, UT, 84335, USA.
Theron GillilandThe Center for Vaccine Research, University of Pittsburgh, Pittsburgh, PA, 165261, USA.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0002-2150-9792
Geeta BudaDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Andrew TrivetteThe Vanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Chengqun SunThe Center for Vaccine Research, University of Pittsburgh, Pittsburgh, PA, 165261, USA.
Justin G JulanderInstitute for Antiviral Research, Utah State University, Logan, UT, 84335, USA.
William B KlimstraThe Center for Vaccine Research, University of Pittsburgh, Pittsburgh, PA, 165261, USA.
James E CroweThe Vanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. james.crowe@vumc.org.ORCID http://orcid.org/0000-0002-0049-1079
Richard J KuhnDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA. kuhnr@purdue.edu.ORCID http://orcid.org/0000-0003-4148-1026

Funding

Project 5: mAb Development Flaviviruses and AlphavirusesU19AI181960 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, KUHN, RICHARD J. · 2024 to 2024
$46.7M
Specific and Broadly Active Monoclonal Antibody Therapeutics Against The FilovirusesU19AI142790 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SAPHIRE, ERICA OLLMANN · 2019 to 2023
$40.0M
Structural Studies of TogavirusesR01AI095366 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J. · 2012 to 2023
$6.8M
Immunobiology of Blood and Vascular Systems Training ProgramT32HL069765 · NHLBI · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 2002 to 2016
$6.5M
Human Monoclonal Antibodies for Encephalitic AlphavirusesR01AI172156 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI James E Crowe, Michael S Diamond · 2022 to 2026
$4.0M
Neutralization of Eastern equine encephalitis virus by human monoclonal antibodiesF31AI145189 · NIAID · VANDERBILT UNIVERSITY · PI WILLIAMSON, LAUREN · 2019 to 2020
$49k
Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) AI095366-10NHLBI NIH HHS T32 HL069765NIAID NIH HHS F31 AI145189NIAID NIH HHS HHSN272201700041INIAID NIH HHS R01 AI095366NIAID NIH HHS R01 AI172156NIAID NIH HHS U19 AI142790NIAID NIH HHS U19 AI181960
6 · The paper itself

Abstract

Eastern equine encephalitis virus (EEEV) is a mosquito-transmitted alphavirus that can cause severe encephalitis in humans and horses with a high case fatality rate. There are no licensed EEEV vaccines or therapeutics for human use, warranting the need to better understand the human immune response against EEEV. Here we present a cryo-EM reconstruction of the chimeric virus, Sindbis (SINV)/EEEV, in complex with a potently neutralizing and efficacious intact human IgG1 antibody in a mouse model of infection and disease. This antibody requires bivalency to recognize a quaternary epitope on the E2 glycoprotein and cross-links two virus spikes across the icosahedral two-fold axis through a unique binding mode. Kinetic analysis of the binding interaction provides insights into this distinguishing feature. Mechanistically, the antibody inhibits viral entry into cells through blockade of receptor binding and early fusion events but does not block egress, thereby, exclusively targeting an epitope found on intact virions. The discovery of the quaternary epitope and unique binding mode recognized by this antibody together advance our understanding of the complexity of antibody-antigen interactions and can aid in vaccine design to elicit recognition of distinct epitopes of clinically relevant alphaviruses.

Indexed as

Antibodies, ViralEncephalitis Virus, Eastern EquineEpitopesImmunoglobulin GSindbis VirusAlphavirusAlphavirus InfectionsAnimalsAntibodies, NeutralizingCryoelectron MicroscopyHumansMiceProtein BindingViral Envelope ProteinsVirus InternalizationAntibodies, NeutralizingAntibodies, ViralEpitopesImmunoglobulin GViral Envelope Proteins

Identifiers

PMID40830099
PMCPMC12365132

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.