Evidence map›Paper›PMID 40829129›Full record

ArticleJMIR public health and surveillance2025

Microorganisms Linked to Health Care-Associated Infections: Modernization of Terminology Resources for Reporting to the National Healthcare Safety Network.

Sheila Abner, Shuai Zheng, Caroline Macumber, Shaun Shakib, Jonathan Edwards, Andrea Benin

Abstract read
In one paragraph

Article in JMIR public health and surveillance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Beyond the Reported Numbers:Antibiotics (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sheila AbnerDivision of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA, 30329, United States, 1 4047183262.ORCID 0000-0003-1073-1846
Shuai ZhengDivision of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA, 30329, United States, 1 4047183262.ORCID 0000-0002-8090-9278
Caroline MacumberClinical Architecture, Carmel, IN, United States.ORCID 0000-0003-4208-6837
Shaun ShakibClinical Architecture, Carmel, IN, United States.ORCID 0009-0005-7206-3769
Jonathan EdwardsDivision of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA, 30329, United States, 1 4047183262.ORCID 0000-0002-1461-8499
Andrea BeninDivision of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA, 30329, United States, 1 4047183262.ORCID 0000-0003-2765-6272

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unlabelled: The National Healthcare Safety Network (NHSN) of the Centers for Disease Control and Prevention (CDC) needed a modernized approach to manage resources containing standardized terminology that specify microorganism data submitted electronically for legacy reporting. Health care-associated infections (HAIs) reported to NHSN require the submission of data regarding specific microorganisms attributed to the patient's condition. Data on microorganisms submitted to the NHSN electronically must use the SNOMED CT terminology standard. Terminology artifacts that guide submission of microorganism data have been maintained in spreadsheets that have become increasingly challenging to manage. This case report details the initial use case for the implementation of off-the-shelf software within the NHSN to modernize the maintenance of terminology assets. Resources that guide reporting microorganisms for HAIs were used as a prototype to demonstrate how a software application can be practically implemented to streamline the maintenance of complex terminology assets. Mission-critical artifacts have been reconciled and consolidated into a single source of truth knowledgebase using an off-the-shelf software solution. This report shares progress and lessons learned regarding the modernization of NHSN's Pathogen Codes resource and its derivative artifacts. A model is now available that can be replicated across other NHSN legacy artifacts. Our experience can be applied to other public health use cases and information systems facing similar challenges with attachments to legacy terminology resources and systems.

Indexed as

Cross InfectionTerminology as TopicCenters for Disease Control and Prevention, U.S.HumansSystematized Nomenclature of MedicineUnited Stateshealth care–associated infectionsmicroorganismspublic health surveillanceSNOMED CTterminology

Identifiers

PMID40829129
PMCPMC12364414

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.