Evidence map›Paper›PMID 40827481›Full record

ArticleBrain pathology (Zurich, Switzerland)2026

Comparison of automated and manual approaches for microglial quantification and classification: A focus on the HALO digital pathology platform.

Laura M Carr, Bianca Guglietti, Ing Chee Wee, Ian F Musgrave, Sanam Mustafa, Frances Corrigan, Lyndsey E Collins-Praino

Abstract readComparative Study
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Laura M CarrSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0002-6008-1389
Bianca GugliettiSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.
Ing Chee WeeSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0002-1181-7791
Ian F MusgraveSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0003-1016-0588
Sanam MustafaSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0002-8677-5151
Frances CorriganSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0001-6150-8893
Lyndsey E Collins-PrainoSchool of Biomedicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0002-4380-7600

Funding

Department of Education and Training, Canberra, AustraliaNeurosurgical Research FoundationUniversity of Adelaide
6 · The paper itself

Abstract

Phenotypic changes in microglia have been linked to multiple neurological conditions, such as dementia, Parkinson's disease, stroke and traumatic brain injury. Consistent identification and classification of microglia is essential in understanding potential links with neurological diseases. Currently, there are several ways by which the microglial population and morphology are assessed, including manually or using open-source image analysis platforms, such as ImageJ. A microglial classification module for the HALO digital pathology platform has been developed for this purpose but has not yet been validated within the literature. The current study therefore conducted a comparison of the performance of this HALO module to manual microglial analysis and to automated analysis via ImageJ using both human and rat brain tissue. In 5 μm thick human tissue, total and activated microglia/mm

Indexed as

BrainImage Processing, Computer-AssistedMicrogliaAgedAnimalsCell CountFemaleHumansMaleRatsgliaHaloimmunohistochemistrymicrogliamicroglia morphology

Identifiers

PMID40827481
PMCPMC12695681

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.