Evidence map›Paper›PMID 40827108›Full record

ArticleJournal of proteome research2025

QSample: An Automated System for Rapid Monitoring of Quality Indicators in Proteomics Samples.

Roger Olivella, Cristina Chiva, Marc Serret, Antoni Hermoso, Eva Borràs, Guadalupe Espadas, Julia Morales-Sanfrutos, Olga Pastor, Amanda Solé, Julia Ponomarenko and 1 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Roger OlivellaCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Cristina ChivaCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Marc SerretCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Antoni HermosoCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0003-2016-6465
Eva BorràsCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0001-5100-7809
Guadalupe EspadasCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Julia Morales-SanfrutosCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Olga PastorCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Amanda SoléCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Julia PonomarenkoCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.
Eduard SabidóCentre for Genomic Regulation (CRG), Dr Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0001-6506-7714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass spectrometry-based proteomics is an essential technique in contemporary biomedicine, offering quantitative, sensitive, and rapid analysis of proteomes. Recent advancements in mass spectrometry have enabled the acquisition of data from increasingly large-scale experiments, often conducted in core facilities and research infrastructures. While automated tools exist to assess instrument performance using predefined control samples, the analysis of experimental samples typically occurs postacquisition, which can delay decision-making and lead to potential data integrity issues. To address these challenges, we developed QSample, an open-source automated system for rapidly monitoring quality indicators in proteomics samples during data collection. QSample enhances the quality control framework by facilitating prompt actions and fast decision-making, ensuring that proteomics core facilities deliver data that adhere to best research practices.

Indexed as

ProteomeProteomicsSoftwareAutomationHumansMass SpectrometryQuality ControlProteomeautomationdata analysismass spectrometrynextflowweb application

Identifiers

PMID40827108
PMCPMC12418486

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.