Evidence map›Paper›PMID 40826320›Full record

ArticleBMC genomic data2025

Complete genome sequence of the halophilic archaeon Haloferax volcanii PC0224, isolated from a solar saltern in Thailand.

Manassanan Phatcharaharikarn, Pattarawan Ruangsuj, Thunwarat Songngamsuk, Parweenuch Santaweesuk, Marut Tangwattanachuleeporn, Kanokporn Srisucharitpanit, Prapimpun Wongchitrat, Montri Yasawong

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In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Manassanan PhatcharaharikarnProgramme on Environmental Toxicology, Chulabhorn Graduate Institute, Bangkok, 10210, Thailand.
Pattarawan RuangsujProgramme on Environmental Toxicology, Chulabhorn Graduate Institute, Bangkok, 10210, Thailand.
Thunwarat SongngamsukProgramme on Environmental Toxicology, Chulabhorn Graduate Institute, Bangkok, 10210, Thailand.
Parweenuch SantaweesukProgramme on Environmental Toxicology, Chulabhorn Graduate Institute, Bangkok, 10210, Thailand.
Marut TangwattanachuleepornFaculty of Allied Health Sciences, Burapha University, 169 Long- Hard Bangsean Road, Saensuk Sub-district, Mueang Chon Buri District, Chon Buri Province, 20130, Thailand.
Kanokporn SrisucharitpanitFaculty of Allied Health Sciences, Burapha University, 169 Long- Hard Bangsean Road, Saensuk Sub-district, Mueang Chon Buri District, Chon Buri Province, 20130, Thailand.
Prapimpun WongchitratCenter for Research Innovation and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Nakhon Pathom, 73170, Thailand.
Montri YasawongProgramme on Environmental Toxicology, Chulabhorn Graduate Institute, Bangkok, 10210, Thailand. montri@cgi.ac.th.

Funding

Chulabhorn Graduate Institute (Fundamental Fund by National Science Research and Innovation Fund (NSRF): fiscal year 2025 FRB680079/0518 Project code 209042
6 · The paper itself

Abstract

objectivesHaloferax volcanii is an extreme halophile belonging to the Haloferacaceae family that thrives in hypersaline environments. This study presents the complete genome sequence of the H. volcanii strain PC0224 isolated from a Thai solar saltern. Genomic data will enhance our understanding of circadian rhythm mechanisms and their evolutionary significance in extremophilic archaea. DATA DESCRIPTION: The H. volcanii PC0224 genome comprises four circular sequences containing 3,773,977 bp and 66.16% GC content. Sequenced using Illumina and PacBio technologies and assembled with Hybracter, the genome contained 3,731 CDS, 6 rRNAs, 54 tRNAs, 2 ncRNAs, and 4 CRISPR arrays. This dataset enables the investigation of circadian rhythm regulatory systems and comparative genomic studies of temporal adaptation mechanisms in extremophilic archaea.

Indexed as

Genome, ArchaealHaloferax volcaniiBase CompositionThailandWhole Genome SequencingCirACirBCirCCircadianCirDClock geneHaloferax volcaniiMicrocin

Identifiers

PMID40826320
PMCPMC12362964

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.