Evidence map›Paper›PMID 40826006›Full record

ArticleBMC genomic data2025

Development of a composite core collection from 5,856 Sesame accessions being conserved in the Indian National Genebank.

Pradeep Ruperao, Kapil Tiwari, Vandana Rai, Rashmi Yadav, Mahalingam Angamuthu, Anuj Kumar Singh, Bhemji P Galvadiya, Anshuman Shah, Nitin Gadol, Ajay Kumar and 16 more

Abstract read
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Pradeep RuperaoCenter of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Kapil TiwariBio Science Research Centre, Sardarkrushinagar Dantiwada Agricultural University, Sardarkrushinagar, 385506, India.
Vandana RaiICAR-National Institute of Plant Biotechnology, PUSA Campus, New Delhi, 110012, India.
Rashmi YadavICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Mahalingam AngamuthuTNAU-Regional Research Station, Vriddhachalam, 606001, India.
Anuj Kumar SinghBio Science Research Centre, Sardarkrushinagar Dantiwada Agricultural University, Sardarkrushinagar, 385506, India.
Bhemji P GalvadiyaBio Science Research Centre, Sardarkrushinagar Dantiwada Agricultural University, Sardarkrushinagar, 385506, India.
Anshuman ShahICAR-National Institute of Plant Biotechnology, PUSA Campus, New Delhi, 110012, India.
Nitin GadolICAR-National Institute of Plant Biotechnology, PUSA Campus, New Delhi, 110012, India.
Ajay KumarICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Rajkumar SubramaniICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Harinder VishwakarmaICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Pradheep KanakasabapathiICAR-NBPGR, Regional station, KAU Campus, Thrissur, 680656, India.
Senthilraja GovindasamyTNAU-Regional Research Station, Vriddhachalam, 606001, India.
Rasna MauryaICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Tamanna BatraICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Aravind JayaramanICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Senthil RamachandranGenebank, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Abhishek RathoreExcellence in Breeding Platform, CIMMYT, Hyderabad, 502324, India.
Kuldeep SinghGenebank, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Rakesh SinghICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Sanjay KaliaDepartment of Biotechnology, Ministry of Science and Technology, Government of India, New Delhi, 110012, India.
Ulavappa B AngadiICAR-Indian Agricultural Statistical Research Institute, PUSA Campus, New Delhi, 110012, India.
Sean MayesCenter of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Gyanendra Pratap SinghICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India.
Parimalan RanganICAR-National Bureau of Plant Genetic Resources (NBPGR), PUSA Campus, New Delhi, 110012, India. r.parimalan@icar.org.in.

Funding

Department of Biotechnology, Ministry of Science and Technology, India 16113200037-1012166
6 · The paper itself

Abstract

objectivesA composite core collection (CCC) in sesame (Sesamum indicum L.) will help utilize genetic resources efficiently. This study reports, using genomics tools, a representative minimal set (CCC) that capture maximal genetic diversity from a set of 5,856 sesame accessions being conserved at the National Genebank (NGB) of the ICAR-NBPGR. The CCC will serve as a valuable resource for researchers and breeders to facilitate sesame improvement for traits such as yield, disease resistance, stress resilience, and nutritional content. Ultimately, this work contributes to the broader goal of improving sesame for an ever-increasing demand for vegetable oil, to meet our food security challenges. DATA DESCRIPTION: This study presents ddRAD-seq data for a total of 5,856 sesame accessions that includes 2,496 accessions (a subset of 5,856 accessions) that was reported by us recently. Using next-generation sequencing (NGS) short-reads over 2.16 Terabases of sequence data were generated, with each sample averaging 1.2 million reads. The study identifies a set of 1,768 sesame accessions as the CCC that captures maximal diversity, genotypic and phenotypic. This will aid researchers in trait discovery, association studies, pre-breeding, and parental selection for complex traits viz., yield, disease resistance, stress resilience, and other economically important traits.

Indexed as

SesamumGenetic VariationGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingIndiaCore collectionddRADGenetic diversitySesame breedingSesame composite core collectionTrait-association

Identifiers

PMID40826006
PMCPMC12363036

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.