Evidence map›Paper›PMID 40825943›Full record

ArticleNature communications2025

Adaptive loss of shortwave-sensitive opsins during cartilaginous fish evolution.

Bo Zhang, Yidong Feng, Meiqi Lv, Lei Jia, Yongguan Liao, Xiaoyan Xu, Axel Meyer, Jinsheng Sun, Guangyi Fan, Yumin Li and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalans.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Bo Zhang *International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China.
Yidong Feng *International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China.
Meiqi Lv *BGI Research, Qingdao, 266555, China.
Lei JiaTianjin Fisheries Research Institute, Tianjin, 300200, China.
Yongguan LiaoInternational Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China.
Xiaoyan XuInternational Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China.
Axel MeyerLehrstuhl für Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Konstanz, Germany.ORCID http://orcid.org/0000-0002-0888-8193
Jinsheng SunTianjin Fisheries Research Institute, Tianjin, 300200, China.
Guangyi FanState Key Laboratory of Genome and Multi-omics Technologies, BGl Research Shenzhen, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0001-7365-1590
Yumin LiInternational Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China.
Yaolei ZhangBGI Research, Qingdao, 266555, China. zhangyaolei@genomics.cn.ORCID http://orcid.org/0000-0003-2131-0254
Na ZhaoSouthern Marine Science and Engineering Guangdong Laboratory-Zhanjiang, Zhanjiang, 524000, China. penguinzn@163.com.ORCID http://orcid.org/0000-0002-7755-3637
Yunkai LiInternational Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China. ykli@shou.edu.cn.ORCID http://orcid.org/0000-0002-3686-1967
Baolong BaoInternational Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, 201306, China. blbao@shou.edu.cn.ORCID http://orcid.org/0000-0003-2267-9686

Funding

National Natural Science Foundation of China (National Science Foundation of China) 42276092
6 · The paper itself

Abstract

Cartilaginous fishes (e.g., sharks, rays, and skates) cannot see blue or violet light, potentially because they lack the shortwave-sensitive cone opsin gene (sws). Widespread gene loss can occur during evolution, but the evolutionary mechanisms underlying sws loss remains unclear. Here, we construct whole-genome assemblies of Okamejei kenojei (skate) and Prionace glauca (blue shark). We then analyze the distribution characteristics and intragroup differences of opsin-related genes in cartilaginous fishes. Using a zebrafish model with sws deleted we infer that in the presence of SWS1 and SWS2, blue and violet light respectively, can induce cell aging. This is followed by photoreceptor layer thinning, demonstrating, sws loss aids in preventing shortwave light damage to the eye. In the retinas of numerous cartilaginous fishes, the tapetum lucidum strongly reflects light. Therefore, in cartilaginous fish, the existence of tapetum lucidum in the retina and loss of sws may be interdependent; in other words, this adaptive gene loss may increase cartilaginous fish fitness.

Indexed as

Biological EvolutionCone OpsinsEvolution, MolecularRod OpsinsSharksSkates, FishAnimalsFish ProteinsLightPhylogenyRetinaZebrafishCone OpsinsFish ProteinsRod Opsins

Identifiers

PMID40825943
PMCPMC12361510

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.