Evidence map›Paper›PMID 40825942›Full record

ArticleNature communications2025

Endogenous OptoRhoGEFs reveal biophysical principles of epithelial tissue furrowing.

Andrew D Countryman, Caroline A Doherty, R Marisol Herrera-Perez, Karen E Kasza

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Andrew D CountrymanDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-0377-8075
Caroline A DohertyDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
R Marisol Herrera-PerezDepartment of Biomedical Engineering, University of Rochester, Rochester, NY, USA.
Karen E KaszaDepartment of Mechanical Engineering, Columbia University, New York, NY, USA. karen.kasza@columbia.edu.ORCID http://orcid.org/0000-0002-0888-3579

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Cale Whitworth · 2014 to 2026
$13.5M
Mechanisms coordinating cell behaviors within tissues during developmentR35GM138380 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Karen Kasza · 2020 to 2026
$2.8M
Using genetics and optogenetics to dissect how Rho signaling is coordinated at distinct subcellular domains to drive epithelial tissue morphogenesisF31HD118793 · NICHD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Andrew Dylan Countryman · 2025 to 2026
$100k
Alfred P. Sloan Foundation Sloan FellowshipDavid and Lucile Packard Foundation (David & Lucile Packard Foundation) Packard FellowshipNational Science Foundation (NSF) CAREER AwardNICHD NIH HHS F31 HD118793NIGMS NIH HHS R35 GM138380NIH HHS P40 OD018537U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) F31HD118793U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM138380
6 · The paper itself

Abstract

During development, epithelia function as malleable sheets that undergo extensive remodeling to shape developing embryos. Optogenetic control of Rho signaling provides an avenue to investigate mechanisms of epithelial morphogenesis, but transgenic optogenetic tools can be limited by variability in expression levels and deleterious effects of transgenic overexpression on development. Here, we use CRISPR/Cas9 to tag Drosophila RhoGEF2 and Cysts/Dp114RhoGEF with components of the iLID/SspB optogenetic heterodimer, permitting light-dependent control over endogenous protein activities. Using quantitative optogenetic perturbations, we uncover a dose-dependence of tissue furrow depth and bending behavior on RhoGEF recruitment, revealing mechanisms by which developing embryos can shape tissues into particular morphologies. We show that at the onset of gastrulation, furrows formed by cell lateral contraction are oriented and size-constrained by basal actomyosin. Our findings demonstrate the use of quantitative, 3D-patterned perturbations of cell contractility to precisely shape tissue structures and interrogate developmental mechanics.

Indexed as

Drosophila melanogasterDrosophila ProteinsRho Guanine Nucleotide Exchange FactorsActomyosinAnimalsAnimals, Genetically ModifiedCRISPR-Cas SystemsEmbryo, NonmammalianEpitheliumGastrulationGene Expression Regulation, DevelopmentalMorphogenesisOptogeneticsSignal TransductionActomyosinDrosophila ProteinsRho Guanine Nucleotide Exchange Factors

Identifiers

PMID40825942
PMCPMC12361397

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.