Evidence map›Paper›PMID 40825790›Full record

ArticleNature communications2025

Analysis wheat wild relatives Thinopyrum intermedium and Roegneria kamoji genomes reveal different polyploid evolution paths.

Silong Sun, Naixiu Che, Liyang Chen, Yongchao Hao, Yongchang Xu, Qingyang Chen, Wenyang Ge, Shuangshuang Qin, Wenxiu Zhang, Chunmei Dong and 10 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Frontiers in plant science · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Silong Sun *State Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China. sunsl@sdau.edu.cn.ORCID http://orcid.org/0000-0002-4541-9126
Naixiu Che *State Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Liyang Chen *Smartgenomics Technology Institute, Tianjin, China.ORCID http://orcid.org/0000-0002-5639-7305
Yongchao HaoState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Yongchang XuState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Qingyang ChenState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Wenyang GeKey Laboratory of Wheat Biology and Genetic Improvement on Southern Yellow & Huai River Valley, Ministry of Agriculture and Rural Affairs, College of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Shuangshuang QinState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Wenxiu ZhangState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Chunmei DongState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Jianqiang LiState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Yuxin LiuState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Fangfang YanState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.
Long HanTai'an Academy of Agricultural Sciences, Tai'an, Shandong, China.
Zhangwei LiuState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China.ORCID http://orcid.org/0000-0003-2196-5058
Liang ZhangCollege of Information Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Chengzhi JiangCenter for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan, China.
Zujun YangCenter for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan, China.
Hongwei WangState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China. wanghongwei@sdau.edu.cn.ORCID http://orcid.org/0000-0002-6611-7813
Lingrang KongState Key Laboratory of Wheat Improvement, College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, China. lkong@sdau.edu.cn.ORCID http://orcid.org/0000-0002-4888-4349

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many wild relatives of wheat in the Triticeae tribe provide important genetic resources for crop improvement, but their complex, polyploid genomes shaped by hybridization remain poorly understood. Here, we assemble and analyze the genomes of Thinopyrum intermedium and Roegneria kamoji, two species commonly used in wheat hybridization. We show that Th. intermedium contains genomic contributions from Pseudoroegneria (St), Dasypyrum (V), and Aegilops (J), while R. kamoji contains subgenomes related to Pseudoroegneria (St), Dasypyrum (V-related "Y"), and Hordeum (H). Phylogenomic evidence indicates that both species underwent independent polyploidization events, with Pseudoroegneria serving as the original maternal donor. R. kamoji likely evolved from tetraploid Roegneria. We also identify two Fhb7 homologs in the St and H subgenomes of R. kamoji that enhance Fusarium head blight resistance in a dosage-dependent manner. These findings refine the understanding of Triticeae polyploid evolution and offer valuable genomic resources for wheat improvement and forage breeding.

Indexed as

Evolution, MolecularGenome, PlantPoaceaePolyploidyTriticumDisease ResistanceFusariumHybridization, GeneticPhylogenyPlant Diseases

Identifiers

PMID40825790
PMCPMC12361396

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.