Evidence map›Paper›PMID 40825775›Full record

ArticleNPJ biofilms and microbiomes2025

Dual-functionality of Nocardiopsis alba B57 in biocontrol and plant growth: a metabolomic approach to agricultural sustainability.

Osama Abdalla Abdelshafy Mohamad, Yong-Hong Liu, Tamer Elsamahy, Shuai Li, Rajivgandhi Govindan, Nigora Kuchkarova, Shaimaa Hatab, Yuanming Zhang, Wen-Jun Li

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Osama Abdalla Abdelshafy Mohamad *State Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China. Osama@aru.edu.eg.
Yong-Hong Liu *State Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China. liuyonghong18@163.com.
Tamer ElsamahyState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
Shuai LiState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
Rajivgandhi GovindanState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
Nigora KuchkarovaState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
Shaimaa HatabFaculty of Organic Agriculture, Heliopolis University for Sustainable Development, Cairo, Egypt.
Yuanming ZhangState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China. zhangym@ms.xjb.ac.cn.
Wen-Jun LiState Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China. liwenjun3@mail.sysu.edu.cn.

Funding

National Natural Science Foundation of China 32000084National Natural Science Foundation of China 32050410306National Natural Science Foundation of China 32400004Third Xinjiang Scientific Expedition Program 2022xjkk1200
6 · The paper itself

Abstract

The increasing incidence of fungal phytopathogens poses a significant challenge to agricultural sustainability, necessitating the development of environmental alternatives to synthetic fungicides and mitigating their ecological impact. This study explores the efficiency of Nocardiopsis alba B57 to produce secondary metabolites with antifungal and plant growth-promoting properties. Untargeted metabolomics using ultra-high-performance liquid chromatography (UPLC-MS/MS) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses identified key metabolites (e.g., carbapenem, menaquinone, and fumiquinazoline) in the co-culture environment with fungal pathogens. Additionally, principal component analysis and OPLS-DA differentiated monoculture and co-culture metabolic profiles, revealed carbapenem biosynthesis as a highly enriched pathway. The comprehensive metabolomics data and the statistical analysis of the identified metabolites confirmed that co-culturing of B57 and fungal strains showed upregulated metabolites (e.g., carbapenem and menaquinone). However, other metabolites (e.g., mupirocin) were downregulated and significantly suppressed. These changes in metabolic activity reflect the organism's adaptive and competitive responses during the co-culture conditions with fungal pathogens and influence plant hormone signaling (e.g., auxin and cytokinin), promoting plant growth and disease resistance. These findings underscore B57's adaptive biosynthetic response to co-culture conditions, supporting its use as a sustainable biocontrol agent and boosting crop productivity.

Indexed as

ActinobacteriaPlant DevelopmentAgricultureAntifungal AgentsCoculture TechniquesMetabolomeMetabolomicsPlant DiseasesPlant Growth RegulatorsTandem Mass SpectrometryAntifungal AgentsPlant Growth Regulators

Identifiers

PMID40825775
PMCPMC12361581

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.