Evidence map›Paper›PMID 40825763›Full record

ArticleNature communications2025

Genetic isolation and metabolic complexity of an Antarctic subglacial microbiome.

Kyung Mo Kim, Kyuin Hwang, Hanbyul Lee, Ahnna Cho, Christina L Davis, Brent C Christner, John C Priscu, Ok-Sun Kim

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kyung Mo Kim *Division of Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea. kmkim@kopri.re.kr.ORCID http://orcid.org/0000-0001-5125-5079
Kyuin Hwang *Division of Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.ORCID http://orcid.org/0000-0002-8609-3660
Hanbyul LeeDivision of Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.ORCID http://orcid.org/0000-0002-7634-9618
Ahnna ChoDivision of Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.ORCID http://orcid.org/0009-0008-9175-4559
Christina L DavisDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.
Brent C ChristnerDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-9894-7360
John C PriscuDepartment of Land Resources and Environmental Sciences-Emeritus, Montana State University, Bozeman, MT, USA. jpriscu@montana.edu.ORCID http://orcid.org/0000-0001-5807-6364
Ok-Sun KimDivision of Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea. oskim@kopri.re.kr.ORCID http://orcid.org/0000-0003-1217-4780

Funding

Korea Polar Research Institute (KOPRI) PE18340, PE20130, PE25130National Science Foundation (NSF) NSF-OPP 1543537, 1543396, 1543405, 1543453 and 1543441
6 · The paper itself

Abstract

Microbes inhabiting and evolving in aquatic ecosystems beneath polar ice sheets subsist under energy-limited conditions while in relative isolation from surface gene pools and their common ancestral populations of origin. Samples obtained from beneath West Antarctic Ice Sheet (WAIS) allowed us to examine evolutionary relationships of and identify metabolic pathways in microbial genomes recovered from the Mercer Subglacial Lake (SLM) ecosystem. We obtained 1,374 single-cell amplified genomes (SAGs) from individual bacterial and archaeal cells that were isolated from samples of SLM's water column and sediments. These genomes reveal that a diversity of microorganisms including Patescibacteria exists in SLM. Comparative analyses show that most genomes correspond to new species and taxonomic groups, with phylogenomic and functional evidence supporting their genetic isolation from marine and surface biomes. Genomic data reveal diverse metabolisms in SLM that are capable of oxidizing organic and inorganic compounds via aerobic or anaerobic respiration. Distinct metabolic guild structures are observed for the subglacial populations, where trophic shifts from organotrophy to chemolithotrophy may depend on oxygen availability. Our SAG data suggest versatile metabolic capabilities in the characterized microbial assemblage, reveal key energy-generating strategies in the subglacial aquatic ecosystem, and provide a framework to assess microbial evolution beneath WAIS.

Indexed as

ArchaeaBacteriaIce CoverMicrobiotaAntarctic RegionsEcosystemGenome, ArchaealGenome, BacterialGeologic SedimentsLakesPhylogeny

Identifiers

PMID40825763
PMCPMC12361377

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.