Evidence map›Paper›PMID 40825536›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2025

Identification of novel protein biomarkers of macrophage polarization using comparative proteomic analyses of murine primary macrophages.

Baolong Liu, Phuong Linh Nguyen, Pengfei Li, Michael J Naldrett, Sophie Alvarez, Jiujiu Yu

Abstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Baolong LiuDepartment of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE, United States.
Phuong Linh NguyenDepartment of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE, United States.
Pengfei LiLaboratory of Animal Center, Medical Experiment Center, Shaanxi University of Chinese Medicine, Xianyang, SN, China.
Michael J NaldrettProteomics and Metabolomics Facility, Nebraska Center for Biotechnology, University of Nebraska-Lincoln, Lincoln, NE, United States.ORCID 0000-0002-6899-5652
Sophie AlvarezProteomics and Metabolomics Facility, Nebraska Center for Biotechnology, University of Nebraska-Lincoln, Lincoln, NE, United States.ORCID 0000-0001-8550-2832
Jiujiu YuDepartment of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE, United States.ORCID 0000-0001-9927-8720

Funding

Role of chive-derived exosome-like nanoparticles in suppressing inflammation in obesityR01DK124590 · NIDDK · UNIVERSITY OF NEBRASKA LINCOLN · PI Jiujiu Yu · 2022 to 2026
$1.7M
Leica SP8 Confocal with Hyvolution2 DeconvolutionS10OD024996 · OD · CASE WESTERN RESERVE UNIVERSITY · PI IMANISHI, YOSHIKAZU · 2018 to 2018
$594k
National Institute of Food and Agriculture Standard 2021-67017-34206NIDDK NIH HHS R01 DK124590NIH HHS R01DK124590NIH HHS S10 OD024996U.S. Department of Agriculture'sU.S. Department of Agriculture's National Institute of Food and Agriculture Standard 2021-67017-34206
6 · The paper itself

Abstract

Macrophages comprise the first line of host responses against injury and pathogens and therefore are critically engaged in tissue repair, host defense, and homeostasis maintenance. Depending on the surrounding microenvironment, macrophages polarize into a wide spectrum of immunophenotypes with 2 extreme opposite ends-proinflammatory M1 and anti-inflammatory M2. Elucidating the biochemical bases of distinct macrophage immunophenotypes, as well as discriminating between these phenotypes, are paramount to understanding the contributions of macrophage subpopulations to health and diseases. In this study, murine bone marrow-derived macrophages were treated with LPS or IL-4 to induce the M1/M(LPS) or M2/M(IL-4) state, respectively. Comparative proteomic analyses demonstrate that M1 and M2 macrophages have their own unique protein landscapes. The signature proteins of M1 and M2 macrophages are engaged in distinct signaling pathways, which offer the biochemical bases for their specialized functions. The plasma membrane proteins Clec4e and Cd72 are identified as new biomarkers to discriminate murine M1 and M2 macrophages, respectively. Comparison of the proteomes of murine and human macrophages leads to identification of 2 new shared M1 biomarkers, Gbp2/GBP2 and Acod1/ACOD1. In addition, CLEC4E is validated as a new M1 biomarker for human primary macrophages. This study provides an unbiased protein dataset of murine primary M1/M(LPS) and M2/M(IL-4) macrophages for future research in macrophage biology. The plasma membrane localization of the new biomarkers Clec4e and Cd72 facilitates their labeling and detection. The new M1 biomarkers shared by human and mouse primary macrophages have potential broad applications in both basic research and clinical practice.

Indexed as

MacrophagesAnimalsBiomarkersCells, CulturedHumansInterleukin-4Lectins, C-TypeLipopolysaccharidesMiceMice, Inbred C57BLProteomeProteomicsBiomarkersInterleukin-4Lectins, C-TypeLipopolysaccharidesProteomebiomarkershuman primary macrophagesmacrophage polarizationmurine primary macrophagesproteomics

Identifiers

PMID40825536
PMCPMC12576133

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.