Evidence map›Paper›PMID 40825071›Full record

ArticlePLoS computational biology2025

Stochastic activity in low-rank recurrent neural networks.

Francesca Mastrogiuseppe, Joana Carmona, Christian K Machens

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Input-dependent directionality of interactions between cortical areas.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Francesca MastrogiuseppeChampalimaud Foundation, Neuroscience Research Programme, Lisbon, Portugal.ORCID 0000-0002-7682-5178
Joana CarmonaChampalimaud Foundation, Neuroscience Research Programme, Lisbon, Portugal.
Christian K MachensChampalimaud Foundation, Neuroscience Research Programme, Lisbon, Portugal.

Funding

Understanding feedforward and feedback signaling between neuronal populationsRF1NS127107 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI KOHN, ADAM, MACHENS, CHRISTIAN · 2022 to 2022
$2.0M
CRCNS: Dissecting Directed Interactions Amongst Multiple Neuronal PopulationsR01EY035896 · NEI · CARNEGIE-MELLON UNIVERSITY · PI ADAM KOHN, Byron M. Yu · 2023 to 2026
$1.3M
Understanding Feedforward and Feedback Signaling Between Neuronal PopulationsR01NS127107 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ADAM KOHN, Byron M. Yu · 2025 to 2026
$1.2M
NEI NIH HHS R01 EY035896NINDS NIH HHS R01 NS127107NINDS NIH HHS RF1 NS127107
6 · The paper itself

Abstract

The geometrical and statistical properties of brain activity depend on the way neurons connect to form recurrent circuits. However, the link between connectivity structure and emergent activity remains incompletely understood. We investigate this relationship in recurrent neural networks with additive stochastic inputs. We assume that the synaptic connectivity can be expressed in a low-rank form, parameterized by a handful of connectivity vectors, and examine how the geometry of emergent activity relates to these vectors. Our findings reveal that this relationship critically depends on the dimensionality of the external stochastic inputs. When inputs are low-dimensional, activity remains low-dimensional, and recurrent dynamics influence it within a subspace spanned by a subset of the connectivity vectors, with dimensionality equal to the rank of the connectivity matrix. In contrast, when inputs are high-dimensional, activity also becomes potentially high-dimensional. The contribution of recurrent dynamics is apparent within a subspace spanned by the totality of the connectivity vectors, with dimensionality equal to twice the rank of the connectivity matrix. Applying our formalism to excitatory-inhibitory networks, we discuss how the input configuration also plays a crucial role in determining the amount of amplification generated by non-normal dynamics. Our work provides a foundation for studying activity in structured brain circuits under realistic noise conditions, and offers a framework for interpreting stochastic models inferred from experimental data.

Indexed as

Computational BiologyRecurrent Neural NetworksComputer SimulationModels, NeurologicalStochastic Processes

Identifiers

PMID40825071
PMCPMC12413093

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.