Evidence map›Paper›PMID 40825038›Full record

ArticlePLoS pathogens2025

Adeno-Associated Virus 2 (AAV2) - Induced RPA exhaustion generates cellular DNA damage and restricts viral gene expression.

Monnette F Summers, MegAnn K Haubold, Marcel Morgenstern, Phoenix Shepherd, Clairine I S Larsen, Ava E Bartz, Gopishankar Thirumoorthy, Robert N Kirchdoerfer, Joshua J Coon, Kavi P M Mehta and 1 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Monnette F SummersInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
MegAnn K HauboldMcArdle Laboratory for Cancer Research, School of Medicine and Public health, Madison, Wisconsin, United States of America.
Marcel MorgensternDepartment of Biomolecular Chemistry, School of Medicine and Public health, Madison, Wisconsin, United States of America.
Phoenix ShepherdInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Clairine I S LarsenInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Ava E BartzInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Gopishankar ThirumoorthyDepartment of Comparative Biosciences, School of Veterinary Medicine, Madison, Wisconsin United States of America.
Robert N KirchdoerferInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Joshua J CoonDepartment of Biomolecular Chemistry, School of Medicine and Public health, Madison, Wisconsin, United States of America.
Kavi P M MehtaDepartment of Comparative Biosciences, School of Veterinary Medicine, Madison, Wisconsin United States of America.
Kinjal MajumderInstitute for Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.ORCID 0000-0002-1898-8251

Funding

TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Graduate Training in Molecular and Cellular PharmacologyT32GM141013 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anjon Audhya, Aaron Matthew LeBeau · 2021 to 2026
$3.2M
Defining how cellular DNA replication and repair machinery are hijacked by viral pathogensR35GM154938 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Kinjal Majumder · 2024 to 2026
$1.1M
How does a viral pathogen manipulate DNA Damage Responses to promote infection?R00AI148511 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MAJUMDER, KINJAL · 2022 to 2023
$498k
How does a viral pathogen manipulate the DNA Damage Response to promote successful viral infection?K99AI148511 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MAJUMDER, KINJAL · 2020 to 2021
$207k
NIAID NIH HHS K99 AI148511NIAID NIH HHS R00 AI148511NIGMS NIH HHS P41 GM108538NIGMS NIH HHS R35 GM154938NIGMS NIH HHS T32 GM141013
6 · The paper itself

Abstract

Parvoviruses are single-stranded DNA viruses that have been modified to serve as vehicles for therapeutic transgene delivery in the form of recombinant Adeno-Associated Virus (rAAV2) vectors or rodent parvovirus-derived oncolytic agents. Infection with viruses of the Parvoviridae family induces a cellular DNA Damage Response (DDR) signal that supports virus replication. However, it remains unknown whether rAAV2 vectors or non-replicative wild-type AAV2 (wtAAV2) genomes induce cellular DDR signals, which might be deleterious to the cell. To determine the impact of wtAAV2/rAAV2 genomes on the integrity of the host chromosome, we have pulsed wtAAV2/rAAV2 infected cells with BrdU analogs followed by single-molecule imaging of the cellular replisomes and proteomic analysis of the host replication forks. We discovered that non-replicative wtAAV2/rAAV2 genomes are sufficient to induce replication stress on the host genome, leading to DDR signals in a dose-dependent manner. Moreover, infection with replication-competent wtAAV2 leads to enrichment of replication stress proteins, DNA repair factors and RNA processing machinery on cellular replication forks. However, neither the wtAAV2 Inverted Terminal Repeats (ITRs) that are retained in rAAV2s nor empty capsids are sufficient to induce host-cell replication stress. Strikingly, incoming wtAAV2 genomes associate with the single-stranded DNA binding protein RPA in host cells in a dose-dependent manner, progressively shortening cellular replication forks. These elevated levels of wtAAV2-induced cellular replication stress eventually leads to accumulation of DDR signals in the nucleus. Chemical inhibition of RPA activity and RNAi-mediated knockdown leads to de-repression of the wtAAV2 genome, increasing Rep 68/78 gene expression. Ectopic expression of RPA rescues wtAAV2-induced replication stress. Taken together, our findings suggest that depletion of cellular stores of RPA molecules by competing wtAAV2 genomes restrict viral gene expression and cause cellular DNA damage.

Indexed as

DependovirusDNA DamageGene Expression Regulation, ViralParvoviridae InfectionsReplication Protein AVirus ReplicationDNA ReplicationHumansReplication Protein ARPA1 protein, human

Identifiers

PMID40825038
PMCPMC12373274

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.