Evidence map›Paper›PMID 40824124›Full record

ArticleJournal of medical Internet research2025

Automated Extraction of Mortality Information From Publicly Available Sources Using Large Language Models: Development and Evaluation Study.

Mohammed Al-Garadi, Michele LeNoue-Newton, Michael E Matheny, Melissa McPheeters, Jill M Whitaker, Jessica A Deere, Michael F McLemore, Dax Westerman, Mirza S Khan, José J Hernández-Muñoz and 4 more

Abstract read
In one paragraph

Article in Journal of medical Internet research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mohammed Al-GaradiDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0002-6991-2687
Michele LeNoue-NewtonDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0003-3469-3784
Michael E MathenyDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0003-3217-4147
Melissa McPheetersResearch Triangle Park, NC, United States.ORCID http://orcid.org/0000-0002-4423-797X
Jill M WhitakerDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0009-0000-5451-2667
Jessica A DeereDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0009-0003-0677-0364
Michael F McLemoreDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0009-0001-4772-4810
Dax WestermanDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0002-9547-7789
Mirza S KhanDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0001-7007-9437
José J Hernández-MuñozUnited States Food and Drug Administration, Silver Spring, MD, United States.ORCID http://orcid.org/0000-0002-2553-3159
Xi WangUnited States Food and Drug Administration, Silver Spring, MD, United States.ORCID http://orcid.org/0000-0001-9478-0199
Aida KuzucanUnited States Food and Drug Administration, Silver Spring, MD, United States.ORCID http://orcid.org/0000-0003-0893-7028
Rishi J DesaiHarvard University, Cambridge, MA, United States.ORCID http://orcid.org/0000-0003-0299-7273
Ruth ReevesDepartment of Biomedical Informatics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, United States, 1 2139151696.ORCID http://orcid.org/0000-0003-4260-2707

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Mortality is a critical variable in health care research, especially for evaluating medical product safety and effectiveness. However, inconsistencies in the availability and timeliness of death date and cause of death (CoD) information present significant challenges. Conventional sources such as the National Death Index and electronic health records often experience data lags, missing fields, or incomplete coverage, limiting their utility in time-sensitive or large-scale studies. With the growing use of social media, crowdfunding platforms, and web-based memorials, publicly available digital content has emerged as a potential supplementary source for mortality surveillance. Despite this potential, accurate tools for extracting mortality information from such unstructured data sources remain underdeveloped. Objective: The aim of the study is to develop scalable approaches using natural language processing (NLP) and large language models (LLMs) for the extraction of mortality information from publicly available web-based data sources, including social media platforms, crowdfunding websites, and web-based obituaries, and to evaluate their performance across various sources. Methods: Data were collected from public posts on X (formerly known as Twitter), GoFundMe campaigns, memorial websites (EverLoved and TributeArchive), and web-based obituaries from 2015 to 2022, focusing on US-based content relevant to mortality. We developed an NLP pipeline using transformer-based models to extract key mortality information such as decedent names, dates of birth, and dates of death. We then used a few-shot learning (FSL) approach with LLMs to identify primary and secondary CoDs. Model performance was assessed using precision, recall, F1-score, and accuracy metrics, with human-annotated labels serving as the reference standard for the transformer-based model and a human adjudicator blinded to the labeling source for the FSL model reference standard. Results: The best-performing model obtained a microaveraged F1-score of 0.88 (95% CI 0.86-0.90) in extracting mortality information. The FSL-LLM approach demonstrated high accuracy in identifying primary CoD across various web-based sources. For GoFundMe, the FSL-LLM achieved 95.9% accuracy for primary cause identification compared to 97.9% for human annotators. In obituaries, FSL-LLM accuracy was 96.5% for primary causes, while human accuracy was 99%. For memorial websites, FSL-LLM achieved 98% accuracy for primary causes, with human accuracy at 99.5%. Conclusions: This study demonstrates the feasibility of using advanced NLP and LLM techniques to extract mortality data from publicly available web-based sources. These methods can significantly enhance the timeliness, completeness, and granularity of mortality surveillance, offering a valuable complement to traditional data systems. By enabling earlier detection of mortality signals and improving CoD classification across large populations, this approach may support more responsive public health monitoring and medical product safety assessments. Further work is needed to validate these findings in real-world health care settings and facilitate the integration of digital data sources into national public health surveillance systems.

Indexed as

Data MiningMortalityNatural Language ProcessingCause of DeathHumansInternetLarge Language ModelsSocial Mediaautomated surveillancefew-shot learninghealth care analyticslarge language modelLLMmortality datanatural language processingNLPobituariespublic health informaticssocial media analysis

Identifiers

PMID40824124
PMCPMC12359966

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.