Evidence map›Paper›PMID 40821775›Full record

ArticleFrontiers in immunology2025

Unveiling ammonia-induced cell death: a new frontier in clear cell renal cell carcinoma prognosis.

Peize Yu, Qikai Zhong, Xinlei Wang, Yifang Liu, Qiang Liu, Yuqiang Zhang, Jiawei Lu, Yang Dong, Cong-Hui Han

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  3. Review
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Peize YuDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Qikai ZhongDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Xinlei WangDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Yifang LiuDepartment of Central Laboratory, Engineering Research Center of Cancer Cell Therapy and Translational Medicine, Xuzhou, Jiangsu, China.
Qiang LiuDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Yuqiang ZhangDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Jiawei LuDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Yang DongDepartment of Urology, Xuzhou Central Hospital, Xuzhou, Jiangsu, China.
Cong-Hui HanDepartment of Urology, Xuzhou Medical University, Xuzhou, Jiangsu, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Clear cell renal cell carcinoma (KIRC) is the most aggressive renal carcinoma subtype of renal carcinoma, characterized by high mortality, early metastasis, and resistance to treatment. Ammonia-induced cell death (AICD) has recently been identified as a novel metabolic mechanism influencing tumor progression, yet its prognostic implication and regulatory networks in KIRC remain underexplored. Methods: Transcriptomic and clinical information from the TCGA-KIRC cohort and the validation cohort (E-MTAB-1980) were analyzed. Differentially expressed AICD-related genes were identified through differential expression analysis, univariate Cox regression, and machine learning algorithms (LASSO, random forest, and CoxBoost). A prognostic risk model was developed via multivariate Cox regression. Spatial and single-cell transcriptomics were employed to characterize the immune microenvironment heterogeneity. Cell-based experiments were performed to investigate the potential involvement of Results: Five AICD-related genes ( Conclusion: This study identifies an AICD-associated gene signature as a robust prognostic tool for KIRC, revealing its interactions with immune evasion and genomic instability.

Indexed as

AmmoniaCarcinoma, Renal CellKidney NeoplasmsBiomarkers, TumorCell DeathCell Line, TumorFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMolecular Docking SimulationPrognosisTranscriptomeTumor MicroenvironmentAmmoniaBiomarkers, Tumorammonia-induced cell deathATP1A1clear cell renal cell carcinomaimmune microenvironmentmetabolic reprogrammingprognostic risk model

Identifiers

PMID40821775
PMCPMC12350399

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.