Evidence map›Paper›PMID 40817410›Full record

ArticleExperimental & molecular medicine2025

The dual roles of peptidoglycans: NOD1 and NOD2 inversely regulate bone metabolism.

Ok-Jin Park, Jiseon Kim, Yeonjin Lim, Chaeyeon Park, Cheol-Heui Yun, Seung Hyun Han

Abstract read
In one paragraph

Article in Experimental & molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ok-Jin ParkDepartment of Oral Microbiology and Immunology, and DRI, School of Dentistry, Seoul National University, Seoul, Republic of Korea.
Jiseon KimDepartment of Oral Microbiology and Immunology, and DRI, School of Dentistry, Seoul National University, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-5367-2148
Yeonjin LimDepartment of Oral Microbiology and Immunology, and DRI, School of Dentistry, Seoul National University, Seoul, Republic of Korea.
Chaeyeon ParkDepartment of Oral Microbiology and Immunology, and DRI, School of Dentistry, Seoul National University, Seoul, Republic of Korea.
Cheol-Heui YunDepartment of Agricultural Biotechnology, and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-0041-2887
Seung Hyun HanDepartment of Oral Microbiology and Immunology, and DRI, School of Dentistry, Seoul National University, Seoul, Republic of Korea. shhan-mi@snu.ac.kr.ORCID http://orcid.org/0000-0001-9418-9278

Funding

National Research Foundation of Korea (NRF) NRF-2022M3A9F3082330, RS-2022-00164722National Research Foundation of Korea (NRF) RS-2023-NR076347
6 · The paper itself

Abstract

Gut microbiota and microbial components are known to regulate bone metabolism. Peptidoglycan, a key bacterial cell wall component, is recognized by NOD1 and NOD2. Muramyl dipeptide (MDP), a ligand for NOD2 found in most bacteria, increases bone mass by promoting bone formation via Runx2 and β-catenin. However, the effects of NOD1 ligands, such as L-Ala-γ-D-glu-meso-diaminopimelic acid (TriDAP) from Gram-negative bacteria, remain poorly understood. Here, we demonstrate that, unlike MDP, TriDAP elicits bone resorption by decreasing osteoblast and Runx2 levels and increasing osteoclasts in the distal femurs of mice intraperitoneally administered TriDAP. This treatment inhibited osteoblast differentiation by downregulating Runx2 expression and also decreased the protein stability of Runx2 by increasing its ubiquitination. TriDAP, but not MDP, reduced the expression of IκB and increased NF-κB transcriptional activity in osteoblasts. The inhibition of osteoblast differentiation by TriDAP occurred through NF-κB activation and NOD1 recognition. TriDAP exhibited a marginal increase in osteoclast differentiation in the presence of RANKL, but it enhanced osteoclast differentiation in an osteoblast-osteoclast co-culture system. This suggests that TriDAP directly affects osteoblasts and indirectly affects osteoclasts. TriDAP did not induce osteoclast differentiation in the presence of NOD1-deficient osteoblasts. Other NOD1 ligands, C12-iE-DAP and C14-Tri-LAN-Gly, also inhibited osteoblastogenesis and promoted osteoclastogenesis, similar to TriDAP. Bacillus cereus peptidoglycan preferentially stimulates NOD1 but not NOD2, leading to increased bone resorption. In conclusion, activation of NOD1 in osteoblasts plays a role in regulating bone homeostasis by enhancing bone resorption.

Indexed as

Bone and BonesNod1 Signaling Adaptor ProteinNod2 Signaling Adaptor ProteinPeptidoglycanAnimalsBone ResorptionCell DifferentiationCore Binding Factor Alpha 1 SubunitDiaminopimelic AcidMaleMiceMice, Inbred C57BLNF-kappa BOsteoblastsOsteoclastsOsteogenesisCore Binding Factor Alpha 1 SubunitDiaminopimelic AcidN(2)-(gamma-D-glutamyl)-meso-2,2'-diaminopimelic acidNF-kappa BNod1 protein, mouseNod1 Signaling Adaptor ProteinNod2 protein, mouseNod2 Signaling Adaptor ProteinPeptidoglycan

Identifiers

PMID40817410
PMCPMC12411613

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.