Evidence map›Paper›PMID 40817182›Full record

ArticleNature microbiology2025

Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium.

Clafy Fernandes, Markus Haber, Paul Layoun, Maria-Cecilia Chiriac, Paul-Adrian Bulzu, Rohit Ghai, Vojtech Kasalicky, Tanja Shabarova, Hans-Peter Grossart, Jason Woodhouse and 8 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Clafy FernandesInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.
Markus HaberInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.ORCID http://orcid.org/0000-0003-2591-6210
Paul LayounInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.
Maria-Cecilia ChiriacInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.
Paul-Adrian BulzuInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.ORCID http://orcid.org/0000-0002-5637-9940
Rohit GhaiInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.ORCID http://orcid.org/0000-0002-0591-6152
Vojtech KasalickyInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.
Tanja ShabarovaInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic.ORCID http://orcid.org/0000-0003-4526-3587
Hans-Peter GrossartLeibniz-Institute of Freshwater Ecology and Inland Fisheries, Stechlin, Germany.ORCID http://orcid.org/0000-0002-9141-0325
Jason WoodhouseLeibniz-Institute of Freshwater Ecology and Inland Fisheries, Stechlin, Germany.
Kasia PiwoszDepartment of Fisheries Oceanography and Marine Ecology, National Marine Fisheries Research Institute, Gdynia, Poland.ORCID http://orcid.org/0000-0002-3248-3364
Cecilia AlonsoCentro Universitario de la Región Este, Universidad de la República, Rocha, Uruguay.ORCID http://orcid.org/0000-0003-3869-4418
Juan ZanettiCentro Universitario de la Región Este, Universidad de la República, Rocha, Uruguay.
David P HamiltonAustralian Rivers Institute, Griffith University, Queensland, Australia.ORCID http://orcid.org/0000-0002-9341-8777
Maxon NgocheraDepartment of Fisheries, Lilongwe, Malawi.
Shin-Ichi NakanoCenter for Ecological Research, Kyoto University, Kyoto, Japan.
Yusuke OkazakiInstitute for Chemical Research, Kyoto University, Kyoto, Japan.
Michaela M SalcherInstitute of Hydrobiology, Biology Centre CAS, Ceske Budejovice, Czech Republic. michaelasalcher@gmail.com.ORCID http://orcid.org/0000-0003-1063-6523

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) GR1540/37-1Grantová Agentura České Republiky (Grant Agency of the Czech Republic) 20-12496XGrantová Agentura České Republiky (Grant Agency of the Czech Republic) 21-21990SGrantová Agentura České Republiky (Grant Agency of the Czech Republic) 22-03662SGrantová Agentura České Republiky (Grant Agency of the Czech Republic) 25-15813SJihočeská Univerzita v Českých Budějovicích (University of South Bohemia in České Budějovice) 017/2022/PJihočeská Univerzita v Českých Budějovicích (University of South Bohemia in České Budějovice) 022/2019/PMEXT | Japan Science and Technology Agency (JST) JPMJFR2273MEXT | Japan Society for the Promotion of Science (JSPS) 18J00300MEXT | Japan Society for the Promotion of Science (JSPS) 22K15182
6 · The paper itself

Abstract

The SAR11-IIIb genus Fontibacterium within the order 'Ca. Pelagibacterales' is recognized for its ubiquitous presence in freshwater environments. However, cultivation limitations have hampered deeper ecophysiological understanding of this genus, with most data limited to lakes in the Northern Hemisphere. Here we present seven isolates representing two previously undescribed species, along with 93 high-quality metagenome-assembled genomes (MAGs) derived from a global survey across five continents. Phylogenomic analysis revealed 16 species forming nine distinct biogeographic clusters, indicating speciation patterns linked to water temperature and latitude. We observed endemic species restricted to African lakes, and quasi-endemic species confined to the Northern or Southern Hemisphere, which co-exist alongside cosmopolitan species. Metabolic profiling and growth experiments uncovered species- and strain-specific adaptations for nutrient uptake, along with unique pathways for sulfur metabolism. These findings provide a global-scale genomic and ecological overview for this underexplored lineage of freshwater SAR11.

Indexed as

Fresh WaterGenome, BacterialLakesMetagenomePhylogenyPhylogeographyRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID40817182

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.