Evidence map›Paper›PMID 40813440›Full record

ArticleScientific reports2025

Revisiting model scaling with a U-net benchmark for 3D medical image segmentation.

Ziyan Huang, Jin Ye, Haoyu Wang, Zhongying Deng, Zhikai Yang, Yanzhou Su, Jie Liu, Tianbin Li, Yun Gu, Shaoting Zhang and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ziyan HuangInstitute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, 200240, China.
Jin YeShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China.
Haoyu WangInstitute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, 200240, China.
Zhongying DengDepartment of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge, CB3 0WA, UK.
Zhikai YangDepartment of Biomedical Engineering and Health, KTH Royal Institute of Technology, Stockholm, 14152, Sweden.
Yanzhou SuShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China.
Jie LiuAccumed Technology Co., Ltd., Shanghai, 200240, China.
Tianbin LiShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China.
Yun GuInstitute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, 200240, China.
Shaoting ZhangShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China.
Yu QiaoShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China.
Lixu GuInstitute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, 200240, China. gulixu@sjtu.edu.cn.
Junjun HeShanghai Artificial Intelligence Laboratory, Shanghai, 200232, China. hejunjun@pjlab.org.cn.

Funding

National Key Research and Development Program of China 2022ZD0160100National Key Research and Development Program of China 2024YFC2418201the Interdisciplinary Fund for Medical and Engineering of SJTU YG2023LC08the Noncommunicable Chronic Diseases-National Science and Technology Major Project 2023ZD0501806
6 · The paper itself

Abstract

Are larger models always better for 3D medical image segmentation? Despite the widespread adoption of 3D U-Net in various medical imaging tasks, this critical question remains underexplored. To challenge the common assumption, we systematically benchmark 18 U-Net variants-adjusting resolution stages, depth, and width-across 42 diverse public datasets. Our findings reveal that the answer is no: optimal architectures are highly task-specific, with smaller models often performing competitively. Specifically, we identify three key insights: (1) increasing resolution stages provides limited benefits for datasets with larger voxel spacing; (2) deeper networks offer limited advantages for anatomically complex shapes; and (3) wider networks provide minimal advantages for tasks with limited segmentation classes. Based on these insights, we provide practical guidelines for optimizing U-Net architectures according to dataset characteristics. Our findings highlight the limitations of the"bigger is better"paradigm while establishing a framework for balancing performance and computational efficiency in 3D medical image segmentation tasks.

Indexed as

Image Processing, Computer-AssistedImaging, Three-DimensionalNeural Networks, ComputerAlgorithmsBenchmarkingHumans

Identifiers

PMID40813440
PMCPMC12354671

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.