Evidence map›Paper›PMID 40813405›Full record

ArticleScientific data2025

Curated CYP450 Interaction Dataset: Covering the Majority of Phase I Drug Metabolism.

Yu-Hao Ni, Yu-Wen Su, Shang-Chen Yang, Jia-Cheng Hong, Po-Wen Allen Du, Yu-Ting Hsu, Tien-Chueh Kuo, Yufeng Jane Tseng

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yu-Hao NiGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.
Yu-Wen SuGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.
Shang-Chen YangSchool of Medicine, National Taiwan University, Taipei, 10051, Taiwan.
Jia-Cheng HongGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.
Po-Wen Allen DuGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.
Yu-Ting HsuGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.
Tien-Chueh KuoGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan.ORCID 0000-0002-4794-0134
Yufeng Jane TsengGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan. yjtseng@csie.ntu.edu.tw.ORCID 0000-0002-8461-6181

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We collected and organized a detailed dataset encompassing both substrates and non-substrates for six principal cytochrome P450 (CYP450) isozymes, responsible for 90% of Phase I drug metabolism in humans. These isozymes, specifically CYP1A2, CYP2C9, CYP2C19, CYP2D6, CYP2E1, and CYP3A4, play critical roles in the detoxification and metabolic processing of therapeutic compounds. The dataset, meticulously assembled, includes interactions with approximately 2000 compounds per enzyme, ensuring comprehensive coverage and high accuracy. Employing a combination of conventional machine learning techniques alongside advanced methodologies such as Graph Convolutional Networks (GCN), robust models have been developed to elucidate these drug-enzyme interactions. The dataset is poised to significantly contribute to fields requiring pharmacokinetic modeling, furthering drug development efforts and toxicological studies by providing an essential resource for the accurate prediction of metabolic pathways, thereby enhancing drug safety and efficacy assessments.

Indexed as

Cytochrome P-450 Enzyme SystemHumansMachine LearningPharmaceutical PreparationsCytochrome P-450 Enzyme SystemPharmaceutical Preparations

Identifiers

PMID40813405
PMCPMC12354672

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.