Evidence map›Paper›PMID 40813378›Full record

ArticleScientific data2025

Baby Open Brains: An open-source dataset of infant brain segmentations.

Eric Feczko, Sally M Stoyell, Lucille A Moore, Dimitrios Alexopoulos, Maria Bagonis, Kenneth Barrett, Brad Bower, Addison Cavender, Taylor A Chamberlain, Greg Conan and 29 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Deep infant brain segmentation from multi-contrast MRI.Conference record. Asilomar Conference on Signals, Systems & Computers · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors.

Eric Feczko *Masonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA. feczk001@umn.edu.ORCID 0000-0003-1337-5517
Sally M Stoyell *Masonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0009-0000-0397-8504
Lucille A MooreMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0002-7665-2713
Dimitrios AlexopoulosWashington University, St. Louis, USA.
Maria BagonisPrimeNeuro, Durham, USA.
Kenneth BarrettPrimeNeuro, Durham, USA.
Brad BowerPrimeNeuro, Durham, USA.
Addison CavenderInstitute of Child Development, University of Minnesota, Minneapolis, USA.
Taylor A ChamberlainUniversity of Chicago, Chicago, USA.
Greg ConanMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Trevor K M DayMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0003-2911-8312
Dhruman GoradiaPrimeNeuro, Durham, USA.
Alice GrahamOregon Health Science University, Portland, USA.
Lucas Heisler-RomanPrimeNeuro, Durham, USA.
Timothy J HendricksonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0001-6862-6526
Audrey HoughtonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Omid KardanUniversity of Michigan, Ann Arbor, USA.
Elizabeth A KiffmeyerDepartment of Neuroscience, University of Minnesota, Minneapolis, USA.ORCID 0009-0000-2817-3067
Erik G LeeMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Jacob T LundquistMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0001-9573-1954
Carina LucenaPrimeNeuro, Durham, USA.
Tabitha MartinInstitute of Child Development, University of Minnesota, Minneapolis, USA.
Anurima MummaneniUniversity of Chicago, Chicago, USA.
Mollie MyricksPrimeNeuro, Durham, USA.
Pranav NarnurPrimeNeuro, Durham, USA.
Anders J PerroneMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Paul ReinersMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Amanda R RueterMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0002-3138-7071
Hteemoo SawInstitute of Child Development, University of Minnesota, Minneapolis, USA.
Martin StynerUniversity of North Carolina, Chapel Hill, USA.
Sooyeon SungMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Barry TiklaskyMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.
Jessica L WisnowskiDepartment of Radiology, University of Southern California, Los Angeles, USA.
Essa YacoubCenter for Magnetic Resonance Research, University of Minnesota, Minneapolis, USA.
Brett ZimmermannInstitute of Child Development, University of Minnesota, Minneapolis, USA.
Christopher D SmyserWashington University, St. Louis, USA.ORCID 0000-0002-4716-5190
Monica D RosenbergUniversity of Chicago, Chicago, USA.ORCID 0000-0001-6179-4025
Damien A FairMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0001-8602-393X
Jed T ElisonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, USA.ORCID 0000-0002-6246-1000

Funding

Healthy Brain and Child Development National Consortium Data Coordinating CenterU24DA055330 · NIDA · WASHINGTON UNIVERSITY · PI ANDERS M DALE, Damien A Fair · 2021 to 2026
$34.6M
ABCD-USA Consortium: Research ProjectU01DA041148 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Damien A Fair, Rebekah S Huber · 2015 to 2026
$22.3M
Identification of outcome-based sub-populations using deep phenotyping and precision functional mapping across ADHD and ASDR01MH096773 · NIMH · UNIVERSITY OF MINNESOTA · PI DOSENBACH, NICO, FAIR, DAMIEN A · 2012 to 2024
$9.4M
Precision mapping of individualized executive networks in youthR37MH125829 · NIMH · UNIVERSITY OF MINNESOTA · PI Damien A Fair, Theodore Satterthwaite · 2021 to 2026
$4.7M
UNC/UMN Baby Connectome ProjectU01MH110274 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELISON, JED THOMAS, GILMORE, JOHN HORACE · 2016 to 2019
$4.5M
Predoctoral Training of NeuroscientistsT32NS105604 · NINDS · UNIVERSITY OF MINNESOTA · PI A DAVID REDISH · 2018 to 2026
$3.5M
Infant Brain and Behavioral Signatures of Later Emerging Risk for PsychopathologyR01MH104324 · NIMH · UNIVERSITY OF MINNESOTA · PI ELISON, JED THOMAS · 2014 to 2018
$2.6M
Gates Foundation INV-015711National Science Foundation (NSF) 2020295366National Science Foundation (NSF) 2237827NIDA NIH HHS U01 DA041148NIDA NIH HHS U24 DA055330NIMH NIH HHS R01 MH096773NIMH NIH HHS R01 MH104324NIMH NIH HHS R37 MH125829NIMH NIH HHS U01 MH110274NINDS NIH HHS T32 NS105604U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32-NS109604U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH096773U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH125829U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R37MH125829U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) U01DA041148U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) U24DA055330
6 · The paper itself

Abstract

Reproducibility of neuroimaging research on infant brain development remains limited due to highly variable processing approaches. Progress towards reproducible pipelines is limited by a lack of benchmarks such as gold-standard brain segmentations. These segmentations are limited by the difficulty of infant brain segmentations, which require extensive neuroanatomical knowledge and are time-consuming in nature. Addressing this, we constructed the Baby Open Brains (BOBs) Dataset, an open source resource of manually curated and expert reviewed infant brain segmentations. Anatomical MRI data was segmented from 71 infant imaging visits across 51 participants, using both T1w and T2w images per visit. Images showed dramatic differences in myelination and intensities across 1-9 months, emphasizing the need for densely sampled gold-standard segmentations across early life. This dataset provides a benchmark for evaluating and improving pipelines dependent upon segmentations in the youngest populations. As such, this dataset provides a vitally needed foundation for early-life large-scale studies such as HBCD.

Indexed as

BrainHumansInfantMagnetic Resonance ImagingNeuroimaging

Identifiers

PMID40813378
PMCPMC12354739

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.