Evidence map›Paper›PMID 40812605›Full record

ArticleSLAS discovery : advancing life sciences R & D2025

High throughput screening for SARS-CoV-2 inhibitors targeting 5 helix bundle.

Emery Smith, Qibin Geng, Justin Shumate, Yuka Otsuka, Louis Scampavia, Thomas D Bannister, Timothy P Spicer

Abstract read
In one paragraph

Article in SLAS discovery : advancing life sciences R & D, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A high throughput assay to identify modulators of Death Receptor 3 (DR3).SLAS discovery : advancing life sciences R & D · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Emery SmithThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA.
Qibin GengUniversity of Minnesota, Department of Pharmacology, Minneapolis, MN 55455, USA.
Justin ShumateThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA.
Yuka OtsukaThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA.
Louis ScampaviaThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA.
Thomas D BannisterThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA.
Timothy P SpicerThe Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, High-throughput Screening Center, Department of Molecular Medicine, Jupiter, FL 33458, USA. Electronic address: spicert@ufl.edu.

Funding

Project 5: Pandemic Virus Helicase InhibitorsU19AI171954 · NIAID · UNIVERSITY OF MINNESOTA · PI Donghoon Chung · 2022 to 2026
$100.9M
Tandem Multi-modal Plate Readers for a High Throughput Screening platformS10OD030330 · OD · UNIVERSITY OF FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2021 to 2021
$600k
HTS Drug  Discovery DispensersS10OD026857 · OD · SCRIPPS FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2019 to 2019
$452k
BioRaptr Replacement Dispensers to Support High Throughput ScreeningS10OD036415 · OD · UNIVERSITY OF FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2024 to 2024
$339k
NIAID NIH HHS U19 AI171954NIH HHS S10 OD026857NIH HHS S10 OD030330NIH HHS S10 OD036415NIH HHS U19-AI171954
6 · The paper itself

Abstract

SARS-CoV-2 and other related viruses enter host cells via receptor recognition and membrane fusion. A crucial part of this is mediated by 5HB which is capable of binding to the viral spike heptad repeats (HR2) making 5HB a potential druggable target of virus entry. Thus, we constructed a 5-Helix Bundle (5HB) pentamer assay for the purpose of identifying potential inhibitors SARS-CoV-2 virus entry. Following implementation and optimization into a 1536 well format, we validated this assay via a pilot HTS and proved we were able to find small molecule inhibitors that appear to compete with the 5HB binding to HR2. This allowed us to push forward and complete the full HTS campaign testing 635,262 compounds. Upon completion of the 5HB pentamer HTS, we also tested and validated a monomer version of the 5HB assay against a pilot screen and then used it to help confirm on-target activity. This allowed for the selection of 130 compounds which were tested in dose titration format against the 5HB pentamer assay. The same compounds were tested in secondary cell-based assays for SARS2 and Machupo virus entry via a dual luciferase transient transfection system. We also incorporated a live/dead cytotoxicity counterscreen. At the conclusion of these screens, 41 compounds were found to be selective inhibitors of the 5HB pentamer assay. From these assays, 31 compounds and analogs were selected which were tested in both the pentamer and monomer assays. 5 compounds emerged which showed good potency in both assays which were then tested in the SARS pseudo virus assay to round out this exercise.

Indexed as

Antiviral AgentsCOVID-19 Drug TreatmentHigh-Throughput Screening AssaysSARS-CoV-2Spike Glycoprotein, CoronavirusCOVID-19HumansProtein BindingSmall Molecule LibrariesVirus InternalizationAntiviral AgentsSmall Molecule LibrariesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-25HBBiochemicalCOVID-19Fluorescence polarizationHTSMonomerPentamer

Identifiers

PMID40812605
PMCPMC13244281

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.