Evidence map›Paper›PMID 40808239›Full record

ArticleMolecular microbiology2025

A Small RNA Derived From the 5' End of the IS200 tnpA Transcript Regulates Multiple Virulence Regulons in Salmonella typhimurium.

Ryan S Trussler, Naomi-Jean Q Scherba, Hoda Kooshapour, Michael J Ellis, Konrad U Förstner, Matthew Albert, Alexander J Westermann, David B Haniford

Abstract read
In one paragraph

Article in Molecular microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ryan S TrusslerDepartment of Biochemistry, University of Western Ontario, London, Ontario, Canada.
Naomi-Jean Q ScherbaDepartment of Biochemistry, University of Western Ontario, London, Ontario, Canada.
Hoda KooshapourDepartment of Microbiology, Biocenter, University of Würzburg, Würzburg, Germany.
Michael J EllisBenchSci, Toronto, Ontario, Canada.
Konrad U FörstnerZB MED, Information Centre for Life Sciences, Cologne, Germany.
Matthew AlbertDepartment of Biochemistry, University of Western Ontario, London, Ontario, Canada.
Alexander J WestermannDepartment of Microbiology, Biocenter, University of Würzburg, Würzburg, Germany.ORCID 0000-0003-3236-0169
David B HanifordDepartment of Biochemistry, University of Western Ontario, London, Ontario, Canada.ORCID 0009-0007-5963-682X

Funding

Canadian Institute for Health Research 159655Canadian Institute for Health Research R1963A08HIRI graduate training program "RNA & InfectionNatural Sciences and Engineering Research Council of Canada R1963A05Natural Sciences and Engineering Research Council of Canada RGPIN/04753-2016the European Research Council (ERC Starting Grant #101040214)
6 · The paper itself

Abstract

The insertion sequence IS200 is widely distributed in Eubacteria. Despite its prevalence, IS200 does not appear to be mobile and as such is considered an ancestral component of bacterial genomes. Previous work in Salmonella enterica revealed that the IS200 tnpA transcript is processed to form a small, highly structured RNA (5'tnpA) that participates in the posttranscriptional control of invF expression, encoding a key transcription factor in this enteropathogen's invasion regulon. To further examine the scope of 5'tnpA transcript integration into Salmonella gene expression networks, we performed comparative RNA-seq, revealing the differential expression of over 200 genes in a Salmonella SL1344 5'tnpA disruption strain. This includes the genes for the master regulators of both invasion and flagellar regulons (HilD and FlhDC, respectively), plus genes involved in cysteine biosynthesis and an operon (phsABC) encoding a thiosulfate reductase complex. These expression changes were accompanied by an 80-fold increase in Salmonella invasion of HeLa cells. Follow-up experimentation suggested an additional direct target of 5'tnpA to be the small RNA PinT, which has previously been shown to be a negative regulator of invasion genes through its inhibitory action on key transcription factors governing the Salmonella pathogenicity island 1 regulon. This study provides a powerful new example of bacterial transposon domestication that is based not on the production/use of a regulatory protein or regulatory DNA sequences, but on the function of a transposon-derived small RNA.

Indexed as

DNA Transposable ElementsRegulonSalmonella typhimuriumBacterial ProteinsGene Expression Regulation, BacterialHeLa CellsHumansOperonRNA, BacterialTranscription FactorsVirulenceBacterial ProteinsDNA Transposable ElementsRNA, BacterialTranscription Factorspost‐transcriptional gene regulationsalmonella pathogenesissmall RNASPI‐1 regulationtransposon domestication

Identifiers

PMID40808239
PMCPMC12594629

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.