Evidence map›Paper›PMID 40806565›Full record

ArticleInternational journal of molecular sciences2025

Valeriya Surimova, Natalya Risinskaya, Ekaterina Kotova, Abdulpatakh Abdulpatakhov, Anastasia Vasileva, Yulia Chabaeva, Sofia Starchenko, Olga Aleshina, Nikolay Kapranov, Irina Galtseva and 6 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Valeriya SurimovaNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0009-0004-0323-1493
Natalya RisinskayaNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0000-0003-2957-1619
Ekaterina KotovaNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Abdulpatakh AbdulpatakhovNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Anastasia VasilevaNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Yulia ChabaevaNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0000-0001-8044-598X
Sofia StarchenkoNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Olga AleshinaNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0000-0002-9969-8482
Nikolay KapranovNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Irina GaltsevaNational Medical Research Center for Hematology, 125167 Moscow, Russia.
Alina Ponomareva"Genomed" Laboratory of Molecular Pathology, 115419 Moscow, Russia.
Ilya Kanivets"Genomed" Laboratory of Molecular Pathology, 115419 Moscow, Russia.
Sergey Korostelev"Genomed" Laboratory of Molecular Pathology, 115419 Moscow, Russia.
Sergey KulikovNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0000-0002-6288-7570
Andrey SudarikovNational Medical Research Center for Hematology, 125167 Moscow, Russia.ORCID 0000-0001-9463-9187
Elena ParovichnikovaNational Medical Research Center for Hematology, 125167 Moscow, Russia.

Funding

Russian Science Foundation 23-25-00490
6 · The paper itself

Abstract

Chromosomal microarray analysis (CMA) was performed for 40 patients with B-ALL undergoing treatment according to the ALL-2016 protocol to investigate the copy number alterations (CNAs) and copy neutral loss of heterozygosity (cnLOH) associated with minimal residual disease (MRD)-positive remission. Aberrations involving over 20,000 genes were identified, and a random forest approach was applied to isolate a subset of genes whose CNAs and cnLOH are significantly associated with poor therapeutic response. We have assembled the triple matched healthy population data and used that data as a reference, but not as a matched control. We identified a recurrent cluster of cnLOH in the 19q13.2-19q13.31 region, significantly enriched in MRD-positive patients (70% vs. 47% in the reference group vs. 16% in MRD-negative patients). This region includes the pregnancy-specific glycoprotein (

Indexed as

Biomarkers, TumorDrug Resistance, NeoplasmMachine LearningPrecursor B-Cell Lymphoblastic Leukemia-LymphomaAdolescentAdultChildChild, PreschoolChromosome AberrationsDNA Copy Number VariationsFemaleHumansLoss of HeterozygosityMaleMicroarray AnalysisNeoplasm, ResidualBiomarkers, Tumoracute B-lymphoblastic leukemia (B-ALL)copy neutral loss of heterozygosity (cnLOH)copy number alterations (CNAs)genesmachine learning

Identifiers

PMID40806565
PMCPMC12347871

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.