Evidence map›Paper›PMID 40804333›Full record

ArticleNature metabolism2025

Resolving early embryonic metabolism in Drosophila through single-embryo metabolomics and transcriptomics.

J Eduardo Pérez-Mojica, Zachary B Madaj, Christine Isaguirre, Joe Roy, Kin H Lau, Ryan D Sheldon, Adelheid Lempradl

Abstract read
In one paragraph

Article in Nature metabolism, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Challenges of studying signaling metabolites in early development.Nature structural & molecular biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J Eduardo Pérez-MojicaDepartment of Metabolism and Nutritional Programming, Van Andel Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0003-4123-0649
Zachary B MadajBioinformatics and Biostatistics Core, Van Andel Institute, Grand Rapids, MI, USA.
Christine IsaguirreMass Spectrometry Core, Van Andel Institute, Grand Rapids, MI, USA.
Joe RoyDepartment of Metabolism and Nutritional Programming, Van Andel Institute, Grand Rapids, MI, USA.
Kin H LauBioinformatics and Biostatistics Core, Van Andel Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0002-7405-1551
Ryan D SheldonMass Spectrometry Core, Van Andel Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0002-1573-9719
Adelheid LempradlDepartment of Metabolism and Nutritional Programming, Van Andel Institute, Grand Rapids, MI, USA. Heidi.Lempradl@vai.org.ORCID http://orcid.org/0000-0002-2621-9532

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
NIH HHS P40 OD018537
6 · The paper itself

Abstract

Early embryonic development marks a shift from maternal factor reliance to zygotic control. Although transcriptional regulation during this period is well characterized, concurrent metabolic events remain largely unknown. Progress has been limited by technical challenges in analysing the small amounts of material and the rapid progression of development. Here, we present a high-resolution, single-embryo multi-omics dataset that captures transcriptional and metabolic dynamics during the first 3 h of Drosophila development. By profiling individual embryos, we uncover stage-specific transcriptional and metabolic programmes, including previously unrecognized transitions in nucleotides, amino acids and other metabolites. Integration of metabolites and transcript modules reveals a limited, selective functional coupling between metabolism and gene expression. This work reframes the maternal-to-zygotic transition as both a transcriptional and metabolic handoff and provides a valuable framework for studying metabolic regulation during development and beyond.

Indexed as

DrosophilaDrosophila melanogasterEmbryonic DevelopmentEmbryo, NonmammalianMetabolomicsTranscriptomeAnimalsGene Expression ProfilingGene Expression Regulation, DevelopmentalMetabolome

Identifiers

PMID40804333
PMCPMC12552126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.