Evidence map›Paper›PMID 40802104›Full record

ArticleJournal of molecular modeling2025

A genetic algorithm search for the global minima of sodium nanoclusters using a tailored DFTB approach.

Nelson R C Junior, Maicon Pierre Lourenço, Breno R L Galvão

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Article in Journal of molecular modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1 citing paper in PubMed.

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5 · Who and what money

Authors and funding

3 authors.

Nelson R C JuniorCentro Federal de Educação Tecnologica de Minas Gerais, CEFET-MG, Av. Amazonas 5253, Belo Horizonte, MG, 30421-169, Brazil.
Maicon Pierre LourençoDepartamento e Química e Física, Centro de Ciências Exatas, Naturais e da Saúde (CCENS), Universidade Federal do Espírito Santo, Alegre, Espírito Santo, 29500-000, Brazil.ORCID http://orcid.org/0000-0002-0110-8318
Breno R L GalvãoCentro Federal de Educação Tecnologica de Minas Gerais, CEFET-MG, Av. Amazonas 5253, Belo Horizonte, MG, 30421-169, Brazil. brenogalvao@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextObtaining the global minimum in the potential energy hypersurface of nanoclusters is a very difficult task, due to the large number of degrees of freedom and the vast number of local minima. However, the discovery of such minima provides the geometrical arrangement that is more likely to occur, which is a key step in computing the properties of such particles. Here we developed a genetic algorithm (GA) including a gradient adjustment in each local optimization, to obtain an efficient GA, which is particularly useful when the algorithm is coupled with electronic structure methods. The idea is first validated, and then used to predict the minima of large sodium nanoclusters up to one hundred atoms.

methodsTo validate the algorithm, we analyzed its efficiency in obtaining the global minima of Lennard-Jones clusters, whose solutions are well known and can be used as benchmark. The new GA is compared to a random search and a standard GA. For exploring the potential energy surface of sodium clusters, we employ the Density-Functional Tight-Binding (DFTB) method, with parameters that have been tuned specifically to such clusters, thus enhancing its reliability for this specific application.

Indexed as

DFTBGenetic algorithmGlobal optimizationSodium clusters

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.