Evidence map›Paper›PMID 40801436›Full record

ArticleMicrobiologyOpen2025

Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium.

Melisa Z Karaman, Ahmet E Yetiman, Jixun Zhan, Ozkan Fidan

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Development of genetic manipulation tools forFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Melisa Z KaramanDepartment of Bioengineering, Faculty of Life and Natural Sciences, Abdullah Gul University, Kayseri, Turkiye.
Ahmet E YetimanDepartment of Food Engineering Department, Faculty of Engineering, Erciyes University, Kayseri, Turkiye.ORCID 0000-0001-8406-7226
Jixun ZhanDepartment of Biological Engineering, College of Engineering, Utah State University, Logan, Utah, USA.
Ozkan FidanDepartment of Bioengineering, Faculty of Life and Natural Sciences, Abdullah Gul University, Kayseri, Turkiye.ORCID 0000-0001-5312-4742

Funding

This study was financially supported by The Scientific and Technological Research Council of Turkiye (TUBITAK) (Grant No: 221Z280).
6 · The paper itself

Abstract

Pseudomonas species are highly adaptable, thriving in diverse environments and exhibiting remarkable genetic and metabolic diversity. While some strains are pathogenic, others have significant ecological and industrial applications. Bioinformatics and biochemical analyses, including antibiotic sensitivity testing, revealed that Pseudomonas loganensis sp. nov. can tolerate NaCl concentrations up to 5% and pH ranges between 5 and 9. Antibiogram results corroborated genome data, demonstrating resistance to vancomycin, ampicillin, methicillin, oxacillin, and penicillin G. Phylogenetic analysis based on 16S rRNA, rpoB, rpoD, and gyrB genes, combined with average nucleotide identity (ANI) comparisons, confirmed P. loganensis sp. nov. as a novel species within the Pseudomonas genus. Genome analysis further revealed the presence of turnerbactin and carotenoid gene clusters. Turnerbactin, known to contribute to nitrogen fixation in plants, highlights the strain's potential as a biofertilizer. Additionally, the carotenoid gene cluster suggests potential applications in industrial carotenoid production. The discovery of a trehalose synthase (treS) gene indicates the capability for one-step conversion of maltose into trehalose, underscoring its potential utility in trehalose production.

Indexed as

EndophytesGenome, BacterialPseudomonasAnti-Bacterial AgentsCarotenoidsComputational BiologyDNA, BacterialMicrobial Sensitivity TestsMultigene FamilyPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAAnti-Bacterial AgentsCarotenoidsDNA, BacterialRNA, Ribosomal, 16Sendophytic bacteriaPseudomonastaxonomyturnerbactinzeaxanthin

Identifiers

PMID40801436
PMCPMC12344725

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.