Evidence map›Paper›PMID 40800297›Full record

ArticleImaging neuroscience (Cambridge, Mass.)2024

Alpha-180 spin-echo-based line-scanning method for high-resolution laminar-specific fMRI in animals.

Sangcheon Choi, David Hike, Rolf Pohmann, Nikolai Avdievich, Lidia Gomez-Cid, Weitao Man, Klaus Scheffler, Xin Yu

Abstract read
In one paragraph

Article in Imaging neuroscience (Cambridge, Mass.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Sangcheon ChoiAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States.
David HikeAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States.
Rolf PohmannMax Planck Institute for Biological Cybernetics, Tuebingen, Baden-Wuerttemberg, Germany.
Nikolai AvdievichMax Planck Institute for Biological Cybernetics, Tuebingen, Baden-Wuerttemberg, Germany.
Lidia Gomez-CidAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States.
Weitao ManAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States.
Klaus SchefflerMax Planck Institute for Biological Cybernetics, Tuebingen, Baden-Wuerttemberg, Germany.
Xin YuAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States.

Funding

Investigating the Thalamic Regulation of Neuro-Glio-Vascular Restoration Underlying Acute Coma Recovery with Multi-Modal fMRI in a Brainstem Coma Rodent ModelR01NS122904 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XIN · 2021 to 2025
$3.2M
Simultaneous functional MRI and Micro-Magnetic Nervous System StimulationR01NS120594 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI AY, ILKNUR, BONMASSAR, GIORGIO · 2021 to 2021
$2.2M
Develop a multi-modal cross-scale fMRI platform with laminar-specific cellular recordings through multi-channel tapered photonic crystal fiber arrayRF1NS113278 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XIN · 2019 to 2019
$2.0M
Investigating the neurophysiological basis of circuit-specific laminar rs-fMRIR01NS124778 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI BISWAL, BHARAT BHUSAN, BROWN, EMERY N · 2025 to 2025
$697k
Bridging the cellular and microvascular anatomy and functional dynamics: Upgrade the 14T horizontal MR for rodent and ex-vivo imagingS10MH124733 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI ROSEN, BRUCE R, YU, XIN · 2020 to 2020
$600k
Development of a Multi-Modal MRI Methodology to Map Paravascular Clearance Linked to Astrocyte Dysfunction in Fetal-Onset HydrocephalusR21NS121642 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XIN · 2021 to 2021
$462k
NIMH NIH HHS S10 MH124733NINDS NIH HHS R01 NS120594NINDS NIH HHS R01 NS122904NINDS NIH HHS R01 NS124778NINDS NIH HHS R21 NS121642NINDS NIH HHS RF1 NS113278
6 · The paper itself

Abstract

Laminar-specific functional magnetic resonance imaging (fMRI) has been widelyused to study circuit-specific neuronal activity by mapping spatiotemporal fMRIresponse patterns across cortical layers. Hemodynamic responses reflect indirectneuronal activity given the limitation of spatial and temporal resolution.Previously, a gradient-echo-based line-scanning fMRI (GELINE) method wasproposed with high temporal (50 ms) and spatial (50 µm) resolution tobetter characterize the fMRI onset time across cortical layers by employing twosaturation RF pulses. However, the imperfect RF saturation performance led topoor boundary definition of the reduced region of interest (ROI) and aliasingproblems outside of the ROI. Here, we propose an α (alpha)-180spin-echo-based line-scanning fMRI (SELINE) method in animals to resolve thisissue by employing a refocusing 180˚ RF pulse perpendicular to theexcitation slice (without any saturation RF pulse) and also achieve highspatiotemporal resolution. In contrast to GELINE signals which peaked at thesuperficial layer, we detected varied peaks of laminar-specific BOLD signalsacross deeper cortical layers using the SELINE method, indicating thewell-defined exclusion of the large draining-vein effect using the spin-echosequence. Furthermore, we applied the SELINE method with a 200 ms repetitiontime (TR) to sample the fast hemodynamic changes across cortical layers with aless draining vein effect. In summary, this SELINE method provides a novelacquisition scheme to identify microvascular-sensitive laminar-specific BOLDresponses across cortical depth.

Indexed as

high-resolution fMRIlaminar specificityline-scanningmicrovascular sensitivityspin-echo

Identifiers

PMID40800297
PMCPMC12247619

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.