Evidence map›Paper›PMID 40800096›Full record

ArticleTranslational andrology and urology2025

Identification of M2 macrophage-related biomarkers for a predictive model of interstitial fibrosis and tubular atrophy after kidney transplantation by machine learning algorithms.

Kaifeng Mao, Xiang Xu, Fenwang Lin, Yige Pan, Zhenquan Lu, Bingfeng Luo, Yifei Zhu, Zhenda Li, Junsheng Ye

Abstract read
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Article in Translational andrology and urology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Kaifeng Mao *Department of Kidney Transplantation, Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China.
Xiang Xu *Division of Urology, Department of Surgery, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Fenwang LinDepartment of Kidney Transplantation, Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China.
Yige PanDepartment of Nursing, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Zhenquan LuDivision of Urology, Department of Surgery, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Bingfeng LuoDivision of Urology, Department of Surgery, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Yifei ZhuDivision of Urology, Department of Surgery, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Zhenda LiDepartment of Thoracic Surgery, the University of Hong Kong-Shenzhen Hospital, Shenzhen, China.
Junsheng YeDepartment of Kidney Transplantation, Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Interstitial fibrosis and tubular atrophy (IFTA) represent significant histopathological manifestations contributing to long-term kidney allograft failure after transplantation. Identifying M2 macrophage (Mφ2)-related biomarkers could enhance early diagnosis and prognosis prediction, improving patient outcomes. This study aimed to explore Mφ2-related biomarkers for IFTA via bioinformatics and machine learning approaches. Methods: RNA sequencing (RNA-seq) data from the GSE98320 dataset were analyzed to identify differentially expressed genes (DEGs). Immune cell profiling using the CIBERSORT algorithm and weighted gene co-expression network analysis (WGCNA) was performed to elucidate Mφ2-related biomarkers modules. Three machine learning algorithms were applied to identify hub genes. A nomogram model was developed and validated using multiple external datasets. Consensus clustering was employed to stratify patients into high-risk and low-risk groups based on hub gene expression. Results: We obtained three hub genes ( Conclusions: Our findings uncovered novel Mφ2-related biomarkers for IFTA, offering diagnostic, prognostic, and therapeutic targets to improve kidney allograft outcomes. This study highlighted the potential of integrating bioinformatics and machine learning approaches to advance personalized medicine in kidney transplantation.

Indexed as

diagnosisInterstitial fibrosis and tubular atrophy (IFTA)kidney transplantationM2 macrophage (Mφ2)machine learning

Identifiers

PMID40800096
PMCPMC12336727

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.