Evidence map›Paper›PMID 40796575›Full record

ArticleScientific data2025

Genome assembly at the chromosome level of Clinopodium barosmum.

Shujie Luo, Ya Yang, Xingyu Yang, Zhifang Li, Tianmeng Liu, Xiaokang Hu, Jian Huang

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shujie Luo *College of Agriculture and Biological Science, Dali University, Dali, Yunnan, 671003, China.
Ya Yang *Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China.
Xingyu Yang *Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, 666303, China.
Zhifang LiCollege of Agriculture and Biological Science, Dali University, Dali, Yunnan, 671003, China.
Tianmeng LiuCollege of Agriculture and Biological Science, Dali University, Dali, Yunnan, 671003, China. tianmeng_liu@163.com.
Xiaokang HuCollege of Agriculture and Biological Science, Dali University, Dali, Yunnan, 671003, China. huxiaokangliu@pku.edu.cn.
Jian HuangInstitute of Tropical and Subtropical Economic Crops, Yunnan Academy of Agricultural Sciences, Baoshan, China. 1052965849@qq.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clinopodium barosmum (C. barosmum), a rare species within the genus Clinopodium of the Lamiaceae family in northwestern Yunnan, is highly valued for its exceptional ecological and medicinal properties. This study presents the successful assembly of the chromosome-level genome of C. barosmum utilizing Nanopore sequencing technology and chromosome conformation capture techniques. The assembled genome spans 518.59 Mb, with a scaffold N50 length of 21.12 Mb. Notably, 99.97% of the genomic data (518.42 Mb) was accurately anchored and assigned to 24 chromosomes. Analysis revealed a high proportion of repetitive sequences, comprising approximately 51.81% of the genome, and identified 41,864 protein-coding genes. Furthermore, a comparative genomic analysis was conducted, establishing a robust foundation and providing valuable reference data for future investigations of C. barosmum.

Indexed as

Chromosomes, PlantGenome, PlantLamiaceaeNanopore SequencingRepetitive Sequences, Nucleic Acid

Identifiers

PMID40796575
PMCPMC12343969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.