Evidence map›Paper›PMID 40794874›Full record

ArticleNucleic acids research2025

High-fidelity and differential nonsense suppression in live cells and a frontotemporal dementia allele with human transfer RNAs.

Aruun Beharry, Cian Ward, Henry Moore, Kyle S Hoffman, Patricia P Chan, Todd M Lowe, Patrick O'Donoghue

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. RiboScreenBiomedicines · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mistranslating tRNA variants impact the proteome and phosphoproteome ofbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aruun BeharryDepartment of Biochemistry, The University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Cian WardDepartment of Biochemistry, The University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Henry MooreDepartment of Biomolecular Engineering, Baskin School of Engineering & UCSC Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, United States.
Kyle S HoffmanBioinformatics Solutions, Inc., Waterloo, Ontario, N2L 3K8, Canada.
Patricia P ChanDepartment of Biomolecular Engineering, Baskin School of Engineering & UCSC Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0003-0810-1642
Todd M LoweDepartment of Biomolecular Engineering, Baskin School of Engineering & UCSC Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0003-3253-6021
Patrick O'DonoghueDepartment of Biochemistry, The University of Western Ontario, London, Ontario, N6A 5C1, Canada.ORCID 0000-0002-9500-8640

Funding

A Unified Atlas of Dynamic tRNA FunctionR01HG006753 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOWE, TODD MICHAEL · 2012 to 2022
$4.6M
Canada Research Chairs 232341CIHR 165985CIHR 197789Huntington Society of Canada Research ChairNatural Sciences and Engineering Research Council of Canada 04282Natural Sciences and Engineering Research Council of Canada 04839Natural Sciences and Engineering Research Council of Canada 580241Natural Sciences and Engineering Research Council of Canada 596289NHGRI NIH HHS R01 HG006753
6 · The paper itself

Abstract

Nonsense mutations generate premature termination codons (PTCs) that are responsible for 11% of genetic disease alleles. The arginine (Arg, CGA) to stop (UGA) mutation is the most common PTC. Humans encode >600 transfer RNA (tRNA) genes with many identical and similar copies. We developed a dual fluorescent reporter to quantify PTC readthrough in live cells and found single nucleotide mutations of human tRNAArg gene variants enabled differential nonsense suppression that depended on the tRNA sequence and the cell type. We investigated G36A variants of all six human tRNAArgUCG isodecoders, and only the TCG-6-1 tRNA, where G36A occurs in 0.01% of human genomes, was unable to translate nonsense codons. With tRNA sequencing, we showed that a suppressor tRNA derived from the TCG-3-1 gene was expressed 2.1-fold higher and generated 1.8-fold more nonsense suppression than a tRNA derived from the TCG-4-1 gene. In a neuroblastoma model of frontotemporal dementia, we observed >70% readthrough of progranulin R493X with a suppressor tRNA that represented 5%-18% of the total tRNAArg pool. The tRNAs outperformed aminoglycoside-induced nonsense suppression in efficacy, tolerability to the cells, and translation fidelity according to mass spectrometry. Our studies show that human nonsense suppressor tRNAs can correct genetic defects that cause disease.

Indexed as

Codon, NonsenseFrontotemporal DementiaRNA, TransferRNA, Transfer, ArgAllelesHumansProtein BiosynthesisCodon, NonsenseRNA, TransferRNA, Transfer, Arg

Identifiers

PMID40794874
PMCPMC12361112

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.