Evidence map›Paper›PMID 40791404›Full record

ArticlebioRxiv : the preprint server for biology2025

Population-scale sequencing resolves correlates and determinants of latent Epstein-Barr Virus infection.

Sherry S Nyeo, Erin M Cumming, Oliver S Burren, Meghana S Pagadala, Jacob C Gutierrez, Thahmina A Ali, Laura C Kida, Yifan Chen, Fengyuan Hu, Benjamin Hollis and 8 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Sherry S NyeoComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Erin M CummingComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Oliver S BurrenCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-3388-5760
Meghana S PagadalaComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jacob C GutierrezComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Thahmina A AliComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Laura C KidaComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Yifan ChenMedical Scientist Training Program, Baylor College of Medicine, Houston, TX, USA.
Fengyuan HuCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Benjamin HollisCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Margarete FabreCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Stewart MacArthurCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Quanli WangCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Leif S LudwigBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-2916-2164
Kushal K DeyComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-3520-2345
Slavé PetrovskiCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-1527-961X
Ryan S DhindsaMedical Scientist Training Program, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-8965-0813
Caleb A LareauComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-4179-4807

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
The Human DNA virome: from petabase scale to single-cell resolutionU01AT012984 · NCCIH · SLOAN-KETTERING INST CAN RESEARCH · PI Caleb Andrew Lareau · 2024 to 2026
$5.2M
Tri-Institutional PhD Program in Computational Biology & MedicineT32GM132083 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Doron Betel, Iman Hajirasouliha · 2020 to 2026
$3.6M
Decoding disease-critical genomic architecture using multimodal single-cell omics dataR01HG014008 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI Kushal Kumar Dey · 2025 to 2026
$1.1M
New approaches for leveraging single-cell data to identify disease-critical genes and gene setsR00HG012203 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI DEY, KUSHAL KUMAR · 2023 to 2025
$747k
Charting somatic evolution via single-cell multiomicsR00HG012579 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI LAREAU, CALEB ANDREW · 2023 to 2025
$747k
NCCIH NIH HHS U01 AT012984NCI NIH HHS P30 CA008748NHGRI NIH HHS R00 HG012203NHGRI NIH HHS R00 HG012579NHGRI NIH HHS R01 HG014008NIGMS NIH HHS T32 GM132083
6 · The paper itself

Abstract

Epstein-Barr Virus (EBV) is an endemic herpesvirus implicated in autoimmunity, cancer, and neurological disorders. Though primary infection typically resolves with subclinical symptoms, long-term complications can arise due to immune dysregulation or viral latency, in which EBV DNA is detectable in blood for decades. Despite the ubiquity of this virus, we have an incomplete understanding of the highly variable responses to EBV that range from asymptomatic infection to a trigger for severe disease. Here, we demonstrate that existing whole genome sequencing (WGS) data contains ample non-human DNA sequences to reconstruct a molecular biomarker of latent EBV infection consistent with orthogonal phenotypes, including viral serology. Using the UK Biobank (

Identifiers

PMID40791404
PMCPMC12338734

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.