Evidence map›Paper›PMID 40790867›Full record

ArticleThe plant genome2025

Dissecting the genomic regions, candidate genes and pathways using multi-locus genome-wide association study for stem rot disease resistance in groundnut.

H V Veerendrakumar, Hari Kishan Sudini, Bangaru Kiranmayee, Talwar Devika, Sunil S Gangurde, R P Vasanthi, A R Nirmal Kumar, Sandip K Bera, Baozhu Guo, Boshou Liao and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

H V VeerendrakumarCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.
Hari Kishan SudiniCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.
Bangaru KiranmayeeCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.
Talwar DevikaCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.
Sunil S GangurdeCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.
R P VasanthiDepartment of Genetics and Plant Breeding, S. V. Agricultural College, Tirupati, Acharya N. G. Ranga Agricultural University, Guntur, India.
A R Nirmal KumarDepartment of Genetics and Plant Breeding, S. V. Agricultural College, Tirupati, Acharya N. G. Ranga Agricultural University, Guntur, India.
Sandip K BeraICAR-Indian Institute of Groundnut Research (IIGR), Junagadh, India.
Baozhu GuoCrop Protection and Management Research Unit, USDA-ARS, Tifton, Georgia, USA.
Boshou LiaoOil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China.
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.ORCID https://orcid.org/0000-0002-4562-9131
Manish K PandeyCenter of Excellence in Genomics & Systems Biology (CEGSB) and Center for Pre-Breeding Research (CPBR), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.ORCID https://orcid.org/0000-0002-4101-6530

Funding

Bill and Melinda Gates Foundation OPP1114827Indian Council of Agricultural Research (ICAR)
6 · The paper itself

Abstract

Stem rot, caused by Sclerotium rolfsii Sacc., is a devastating soil-borne disease causing up to 80% yield losses in groundnut globally. To dissect the genetic basis of resistance, we evaluated a diverse minicore germplasm panel over 3 years in stem rot sick-field conditions. Multi-locus genome-wide association study with the 58K single nucleotide polymorphisms (SNPs) Axiom_Arachis array genotyping identified 13 significant genomic regions associated with resistance across eight chromosomes with logarithm of the odds (LOD) scores ranging from 4.5 to 12.4 and R

Indexed as

ArachisDisease ResistancePlant DiseasesBasidiomycotaGenes, PlantGenome, PlantGenome-Wide Association StudyPolymorphism, Single Nucleotide

Identifiers

PMID40790867
PMCPMC12340334

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.