Evidence map›Paper›PMID 40790325›Full record

ArticleScientific reports2025

RpiBeh offers a versatile open source solution for rodent behavior tracking and closed loop interventions.

Yiqi Sun, Jie Zhang, Qianyun Wang, Jianguang Ni

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yiqi Sun *State Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Department of Neurosurgery, Huashan Hospital, Institutes of Brain Science, Fudan University, Shanghai, 200032, China.
Jie Zhang *State Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Department of Neurosurgery, Huashan Hospital, Institutes of Brain Science, Fudan University, Shanghai, 200032, China.
Qianyun WangState Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Department of Neurosurgery, Huashan Hospital, Institutes of Brain Science, Fudan University, Shanghai, 200032, China.
Jianguang NiState Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Department of Neurosurgery, Huashan Hospital, Institutes of Brain Science, Fudan University, Shanghai, 200032, China. jguangni@fudan.edu.cn.

Funding

National Key R&D Program of China 2024YFF1206500National Natural Science Foundation T2394531Shanghai Municipal Science and Technology Major Project 2018SHZDZX01
6 · The paper itself

Abstract

High-precision behavior tracking and closed-loop intervention are essential for studying the neural basis of cognition and behavior. Existing commercial systems are costly and inflexible for customization, while current open-source tools are often lack of real-time functionality and suffer from steep learning curve. To address these issues, we developed RpiBeh, an open-source, cost-effective, and versatile software tailored for rodent neuroethological research. The software features an intuitive interface with extensive customization options. RpiBeh leverages a Raspberry Pi and camera for video streaming, enabling behavior-driven closed-loop control. Additionally, it provides frame-by-frame video timestamp output for precise synchronization with external devices. For real-time tracking and locomotion pattern analysis, RpiBeh utilizes several novel algorithms and integrated newly developed deep-learning method. Specifically, we introduced two algorithms: a Background Subtraction Method (BSM) for real-time position tracking and a Frame Difference (FD) algorithm for freezing behavior detection. RpiBeh was validated in single animal real-time tracking and locomotion pattern detection, demonstrating flexibility and effectiveness in configurating behavior-triggered closed-loop reinforcement experiments including passive place avoidance task and social fear conditioning tasks. It achieved the same level of performance in tracking and locomotion pattern detection comparing to benchmark software including ANY-maze and DeepLabCut, with superior customization and expandability. Consequently, RpiBeh offers an efficient, affordable, and open-source solution for video tracking and behavior-driven closed-loop experiments.

Indexed as

Behavior, AnimalSoftwareAlgorithmsAnimalsLocomotionRatsVideo RecordingBehavioral pattern analysisClosed-loop interventionOpen-source softwareRaspberry piReal-time tracking

Identifiers

PMID40790325
PMCPMC12340062

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.