Evidence map›Paper›PMID 40790260›Full record

ArticleNature plants2025

Plants repress ROS1 expression to attenuate heat-induced transposon burst.

Lingjiao Fan, Yuqing Jing, Xinyu Liu, Wenxin Zhang, Yingjie Mi, Linhua Sun, Liu-Min Fan, Weiqiang Qian

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Features of DNA methylome in Capsicum spp.Epigenetics & chromatin · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lingjiao Fan *State Key Laboratory of Wheat Improvement, School of Advanced Agricultural Sciences, Peking University, Beijing, China.ORCID 0009-0009-5184-9390
Yuqing Jing *State Key Laboratory for Gene Function and Modulation Research, School of Life Sciences, Peking University, Beijing, China.
Xinyu LiuState Key Laboratory for Gene Function and Modulation Research, School of Life Sciences, Peking University, Beijing, China.
Wenxin ZhangAcademy for Advanced Interdisciplinary Studies, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.ORCID 0000-0001-5264-6709
Yingjie MiPeking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agriculture Sciences in Weifang, Weifang, China.
Linhua SunCollege of Life Sciences, Nanjing Normal University, Nanjing, China.ORCID 0000-0003-0086-2308
Liu-Min FanState Key Laboratory for Gene Function and Modulation Research, School of Life Sciences, Peking University, Beijing, China.
Weiqiang QianState Key Laboratory of Wheat Improvement, School of Advanced Agricultural Sciences, Peking University, Beijing, China. wqqian@pku.edu.cn.ORCID 0000-0002-3135-6689

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32170285National Natural Science Foundation of China (National Science Foundation of China) 32270288
6 · The paper itself

Abstract

The active DNA demethylase Repressor of Silencing 1 (ROS1) regulates genomic DNA methylation patterns during plant development. ROS1 expression is promoted by DNA methylation within its promoter region. However, the mechanisms and biological significance of ROS1 regulation under abiotic stresses remain elusive. Here we show that heat stress reduces DNA methylation in the ROS1 promoter to suppress its expression. Under normal conditions, SUVH1 and SUVH3 bind methylated ROS1 promoter regions, inhibiting chromatin interactions around the ROS1 locus; heat stress triggers their dissociation, enabling chromatin loop formation to suppress ROS1 transcription. Transgenic plants with exogenous ROS1 maintain high expression levels during heat stress, causing transposable element hypomethylation and enhanced transcription and transgenerational transposition of the heat-activated retrotransposon ONSEN. We propose that heat-induced suppression of ROS1 transcription, which is conserved across plant species, serves as a brake system to limit transposable element activation, thereby safeguarding genome stability.

Indexed as

ArabidopsisArabidopsis ProteinsDNA Transposable ElementsGene Expression Regulation, PlantHeat-Shock ResponseNuclear ProteinsDNA MethylationHot TemperaturePlants, Genetically ModifiedPromoter Regions, GeneticArabidopsis ProteinsDNA Transposable ElementsNuclear ProteinsROS1 protein, Arabidopsis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.