Evidence map›Paper›PMID 40790047›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the Phoxinus lagowskii.

Han Zheng, Peng Xie, Xiaoyu Zheng, Xufa Ma, Kaijian Wei, Rui Han

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Han ZhengCollege of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China.
Peng XieHubei Key Laboratory of Edible Wild Plants Conservation and Utilization, College of Life Sciences, Hubei Normal University, Huangshi, 435002, China. xp2024@hbnu.edu.cn.ORCID 0009-0002-2884-7273
Xiaoyu ZhengCollege of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China.
Xufa MaCollege of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China.
Kaijian WeiCollege of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China.
Rui HanState Key Loaboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, 100038, China.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32002390 and 52179083National Natural Science Foundation of China (National Science Foundation of China) 52179083
6 · The paper itself

Abstract

Phoxinus lagowskii is an economically important freshwater fish species native to China. In this study, a chromosome-level genome assembly of P. lagowskii was assembled using PacBio and Hi-C sequencing technologies. The total genome size was 1.22 Gb, with a contig N50 of 38.16 Mb. The final assembly comprised 25 chromosomes, with an anchor rate of 96.29%, resulting in a total anchored length of 1,173,227,270 bp. The genome completeness, as evaluated by the BUSCO assessment, was 94.2%. The genome contained 33,449 predicted protein-coding genes, and the BUSCO completeness for the gene set was 93.6%. A total of 76,416 proteins were predicted, of which 95.29% had functional annotations. Repetitive sequences in the genome totaled 626.50 Mb, representing 51.42% of the entire genome. This genome assembly of P. lagowskii provides significant insights into its biological traits, genetic diversity, and adaptive responses to environmental pressures. Moreover, it lays the groundwork for future genetic improvements in the aquaculture of this species.

Indexed as

ChromosomesCyprinidaeGenomeAnimalsChinaMolecular Sequence AnnotationRepetitive Sequences, Nucleic Acid

Identifiers

PMID40790047
PMCPMC12340111

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.