Evidence map›Paper›PMID 40789955›Full record

ArticleNature cell biology2025

A SETD2-CDK1-lamin axis maintains nuclear morphology and genome stability.

Abid Khan, Cheng Zhang, Phu G Nguyen, James M Metts, Lucas C Collins, Kanishk Jain, C Allie Mills, Logan Vlach, Kelin Li, Amanda L Brademeyer and 9 more

Abstract read
In one paragraph

Article in Nature cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Loss of SETD2-mediated H3K36me3 Drives CD8Research (Washington, D.C.) · 2026
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Abid KhanDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Cheng Zhang *Department of Pathology, UT Southwestern Medical Center, Dallas, TX, USA.
Phu G Nguyen *Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
James M Metts *Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Lucas C CollinsDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Kanishk JainDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8039-0464
C Allie MillsUNC Proteomics Core Facility, Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Logan VlachThe James Cancer Hospital, Ohio State University Comprehensive Cancer Center, Columbus, OH, USA.
Kelin LiDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-8630-2928
Amanda L BrademeyerDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Brittany M BowmanLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Michael B MajorLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-6753-8513
Jeffrey AubéDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0003-1049-5767
Laura E HerringUNC Proteomics Core Facility, Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0003-4496-7312
W Kimryn RathmellThe James Cancer Hospital, Ohio State University Comprehensive Cancer Center, Columbus, OH, USA.
Frank M MasonThe James Cancer Hospital, Ohio State University Comprehensive Cancer Center, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-1338-494X
Ian J DavisLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Qing ZhangDepartment of Pathology, UT Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-6595-8995
Brian D StrahlDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. brian_strahl@med.unc.edu.ORCID http://orcid.org/0000-0002-4947-6259

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
MULTIDISCIPLINARY BASIC RESEARCH TRAINING IN CANCERT32CA009592 · NCI · VANDERBILT UNIVERSITY · PI Justin M Balko, Julie A Rhoades (Sterling) · 1987 to 2026
$10.4M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Convergent Drivers of Tumor Evolution at the Mitotic SpindleR01CA275082 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ruhee Dere, Frank M Mason · 2022 to 2026
$2.8M
NCI NIH HHS R01 CA275082NIGMS NIH HHS R35 GM126900U.S. Department of Health & Human Services | National Institutes of Health (NIH) 2P30CA016086U.S. Department of Health & Human Services | National Institutes of Health (NIH) CA275082U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30CA016086U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32CA009592U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM126900
6 · The paper itself

Abstract

Histone methyltransferases regulate chromatin organization and are frequently mutated in human diseases, including cancer. One such often mutated methyltransferase, SETD2, associates with transcribing RNA polymerase II and catalyses H3K36me3-a modification that contributes to gene transcription, splicing and DNA repair. Although its catalytic function is well-characterized, its non-catalytic roles remain unclear. Here we reveal a catalysis-independent function of SETD2 in nuclear lamina stability and genome integrity. Through its intrinsically disordered amino terminus, SETD2 associates with lamina-associated proteins, including lamin A/C, lamin B1 and emerin. Loss of SETD2 or its N terminus leads to severe nuclear morphology defects and genome instability, mirroring lamina dysfunction. Mechanistically, the N terminus of SETD2 serves as a scaffold for the mitotic kinase CDK1 and lamins, facilitating lamin phosphorylation and depolymerization during mitosis. Restoration of the N-terminal regions required for interaction with CDK1 and lamins rescues nuclear morphology and suppresses tumorigenic growth in a clear cell renal cell carcinoma model with SETD2 haploinsufficiency. These findings reveal a previously unrecognized role of SETD2 in nuclear lamina organization and genome maintenance that probably extends to its role as a tumour suppressor.

Indexed as

Carcinoma, Renal CellCDC2 Protein KinaseCell NucleusGenomic InstabilityHistone-Lysine N-MethyltransferaseKidney NeoplasmsLamin Type AAnimalsCell Line, TumorHEK293 CellsHumansMiceMitosisNuclear LaminaPhosphorylationCDC2 Protein KinaseCDK1 protein, humanHistone-Lysine N-MethyltransferaseLamin Type ASETD2 protein, human

Identifiers

PMID40789955
PMCPMC12912276

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.