Evidence map›Paper›PMID 40789147›Full record

ArticleJMIR formative research2025

Evaluating a Customized Version of ChatGPT for Systematic Review Data Extraction in Health Research: Development and Usability Study.

Jayden Sercombe, Zachary Bryant, Jack Wilson

Abstract read
In one paragraph

Article in JMIR formative research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Prompt injection of OpenAI custom GPTs leaks informatics secrets.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jayden Sercombe *The Matilda Centre for Research in Mental Health and Substance Use, University of Sydney, Jane Foss Russell Building (G02), Level 6, Sydney, 2006, Australia, 612 8627 9380.ORCID 0000-0002-9051-0340
Zachary Bryant *The Matilda Centre for Research in Mental Health and Substance Use, University of Sydney, Jane Foss Russell Building (G02), Level 6, Sydney, 2006, Australia, 612 8627 9380.ORCID 0000-0002-2115-1516
Jack WilsonThe Matilda Centre for Research in Mental Health and Substance Use, University of Sydney, Jane Foss Russell Building (G02), Level 6, Sydney, 2006, Australia, 612 8627 9380.ORCID 0000-0002-2732-1731

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Systematic reviews are essential for synthesizing research in health sciences; however, they are resource-intensive and prone to human error. The data extraction phase, in which key details of studies are identified and recorded in a systematic manner, may benefit from the application of automation processes. Recent advancements in artificial intelligence, specifically in large language models (LLMs) such as ChatGPT, may streamline this process. Objective: This study aimed to develop and evaluate a custom Generative Pre-Training Transformer (GPT), named Systematic Review Extractor Pro, for automating the data extraction phase of systematic reviews in health research. Methods: OpenAI's GPT Builder was used to create a GPT tailored to extract information from academic manuscripts. The Role, Instruction, Steps, End goal, and Narrowing (RISEN) framework was used to inform prompt engineering for the GPT. A sample of 20 studies from two distinct systematic reviews was used to evaluate the GPT's performance in extraction. Agreement rates between the GPT outputs and human reviewers were calculated for each study subsection. Results: The mean time for human data extraction was 36 minutes per study, compared to 26.6 seconds for GPT generation, followed by 13 minutes of human review. The GPT demonstrated high overall agreement rates with human reviewers, achieving 91.45% for review 1 and 89.31% for review 2. It was particularly accurate in extracting study characteristics (review 1: 95.25%; review 2: 90.83%) and participant characteristics (review 1: 95.03%; review 2: 90.00%), with lower performance observed in more complex areas such as methodological characteristics (87.07%) and statistical results (77.50%). The GPT correctly extracted data in 14 instances (3.25% in review 1) and four instances (1.16% in review 2) when the human reviewer was incorrect. Conclusions: The custom GPT significantly reduced extraction time and shows evidence that it can extract data with high accuracy, particularly for participant and study characteristics. This tool may offer a viable option for researchers seeking to reduce resource demands during the extraction phase, although more research is needed to evaluate test-retest reliability, performance across broader review types, and accuracy in extracting statistical data. The tool developed in the current study has been made open access.

Indexed as

Artificial IntelligenceInformation Storage and RetrievalSystematic Reviews as TopicGenerative Artificial IntelligenceHumansReproducibility of ResultsAIartificial intelligenceChatGPTdata extractionlarge language modelsLLMsystematic reviews

Identifiers

PMID40789147
PMCPMC12338963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.