Evidence map›Paper›PMID 40789029›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Measuring the selective packaging of RNA molecules by viral coat proteins in cells.

Amineh Rastandeh, Nino Makasarashvili, Herman K Dhaliwal, Sherry Baker, Sundharraman Subramanian, Daniel A Villarreal, Elmer I Gamez, Kristin N Parent, Rees F Garmann

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Amineh Rastandeh *Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0009-0002-7662-7187
Nino Makasarashvili *Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0009-0001-1987-0650
Herman K DhaliwalDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0000-0003-1133-9619
Sherry BakerDepartment of Biology, San Diego State University, San Diego, CA 92182.
Sundharraman SubramanianDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.
Daniel A VillarrealDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0000-0001-9011-3719
Elmer I GamezDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0009-0006-9055-0648
Kristin N ParentDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-6095-0628
Rees F GarmannDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182.ORCID 0000-0002-9578-4826

Funding

Bacteriophage interactions with enteric pathogens-the essential role of inner membrane protein YajCR35GM140803 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Kristin N Parent · 2021 to 2026
$2.5M
Direct measurements of RNA virus nucleocapsid self-assembly and disassemblyR35GM157105 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI Rees F Garmann · 2025 to 2026
$746k
Mapping the assembly pathways for viral capsids by direct single-particle measurementsR00GM127751 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI GARMANN, REES F · 2021 to 2023
$746k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
HHS | NIH | National Institute of General Medical Sciences (NIGMS) R00GM127751HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM140803HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM157105NIGMS NIH HHS R00 GM127751NIGMS NIH HHS R35 GM140803NIGMS NIH HHS R35 GM157105NIH HHS S10 OD026929NSF (NSF) 2443955
6 · The paper itself

Abstract

Some RNA viruses package their genomes with extraordinary selectivity, assembling protein capsids around their own viral RNA while excluding nearly all host RNA. How the assembling proteins distinguish viral RNA from host RNA is not fully understood, but RNA structure is thought to play a key role. To test this idea, we perform in-cellulo packaging experiments using bacteriophage MS2 coat proteins and a variety of RNA molecules in

Indexed as

Capsid ProteinsLevivirusRNA, ViralVirus AssemblyEscherichia coliCapsid ProteinsRNA, Viralbacteriophage MS2capsid assemblypackaging signalsplus-strand RNA virusRNA packaging

Identifiers

PMID40789029
PMCPMC12377776

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.