Evidence map›Paper›PMID 40788136›Full record

ArticleMicrobiology resource announcements2025

The TIGER/Islander resource for genomic islands.

Steven L Yu, Hannah M McClain, Ellis L Torrance, Joseph S Schoeniger, Catherine M Mageeney, Kelly P Williams

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Steven L YuSandia National Laboratories, Livermore, California, USA.
Hannah M McClainSandia National Laboratories, Livermore, California, USA.
Ellis L TorranceSandia National Laboratories, Livermore, California, USA.
Joseph S SchoenigerSandia National Laboratories, Livermore, California, USA.ORCID 0000-0002-2719-7435
Catherine M MageeneySandia National Laboratories, Livermore, California, USA.ORCID 0000-0001-7969-1622
Kelly P WilliamsSandia National Laboratories, Livermore, California, USA.ORCID 0000-0002-2606-9562

Funding

Sandia National Laboratories LDRDU.S. Deparment of Energy, Biological and Environmental Research program InCoGenTEC
6 · The paper itself

Abstract

Genomic islands (GIs) are integrative mobile DNAs shared among bacteria or archaea, often bringing cargo genes that affect bacterial phenotypes like virulence and metabolism; many are prophages with utility in therapy. We applied our TIGER and Islander software to ~460,000 prokaryotic genomes, yielding a large database containing ~1.75 million GIs.

Indexed as

bioinformaticscomparative genomicsgenomic islandsequence database

Identifiers

PMID40788136
PMCPMC12424338

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.