Evidence map›Paper›PMID 40787634›Full record

ArticleHuman mutation2025

Integration of Immune Cell Signatures and Diagnostic Gene Markers in Pancreatitis: A Comprehensive Study on Therapeutic Targets and Predictive Diagnosis.

Qianyu Xie, Birong Liu, Xiao Yu, Xiang Wei, Qiangsheng Xiao

Abstract read
In one paragraph

Article in Human mutation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qianyu XieDepartment of Interventional Vascular Surgery, Changsha Fourth Hospital, Changsha, China.ORCID https://orcid.org/0009-0004-0186-7711
Birong LiuDepartment of Hematology, The Third Xiangya Hospital of Central South University, Changsha, China.ORCID https://orcid.org/0009-0007-4321-7268
Xiao YuDepartment of Hepatobiliary and Pancreatic Surgery, The Third Xiangya Hospital of Central South University, Changsha, China.ORCID https://orcid.org/0000-0002-3172-8606
Xiang WeiDepartment of Hepatobiliary and Pancreatic Surgery, The Third Xiangya Hospital of Central South University, Changsha, China.ORCID https://orcid.org/0009-0009-7468-500X
Qiangsheng XiaoDepartment of Hepatobiliary and Pancreatic Surgery, The Third Xiangya Hospital of Central South University, Changsha, China.ORCID https://orcid.org/0009-0009-3728-6595

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pancreatitis is a severe and increasingly prevalent disease that affects the digestive system. Early detection and accurate diagnosis of this condition are crucial for reducing mortality rates and improving patient outcomes. Therefore, the development of novel diagnostic markers is essential for enhancing clinical management and advancing the understanding of pancreatitis. The initial phase involved applying the ssGSEA method to extract hypoxia scores from these samples. Subsequently, a thorough differential expression analysis was performed, complemented by functional assessments and various machine learning techniques designed to pinpoint critical diagnostic genes relevant to pancreatitis. From this, a robust diagnostic model was constructed and validated using a series of machine learning strategies. To further validate our results, molecular docking studies were conducted to determine the binding affinities between the identified markers and standard medications such as omeprazole and lansoprazole. Additionally, the ssGSEA methodology was leveraged to compute immune cell scores within the pancreatitis samples, thus enriching the analysis of the relationships between significant diagnostic genes and various immune cell types. Finally, the experiments of ELISA and qRT-PCR were used to verify the expression of key target genes. Through WGCNA, we identified a total of 50 genes associated with hypoxic conditions within the pancreatitis samples. Further investigations, including differential expression analysis and machine learning techniques, revealed six significant diagnostic markers for pancreatitis: RAP1GDS1, TOP2A, ADK, POLL, CD44, and CD4. The diagnostic model we developed exhibited a high accuracy level in predicting pancreatitis onset, while molecular docking analyses indicated that these six key diagnostic genes hold promise as drug targets. Moreover, the ssGSEA algorithm confirmed the relationships between these diagnostic markers and a range of immune cell populations. Ultimately, the expression levels of the identified key genes were rigorously validated through experimental techniques, reinforcing the credibility of our findings.

Indexed as

PancreatitisBiomarkersComputational BiologyGene Expression ProfilingGene Regulatory NetworksGenetic MarkersHumansMachine LearningMolecular Docking SimulationBiomarkersGenetic Markersbioinformaticshypoxiaimmune infiltrationmachine learningpancreatitis

Identifiers

PMID40787634
PMCPMC12334279

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.