Evidence map›Paper›PMID 40785415›Full record

ArticleMicrobial biotechnology2025

Evaluation of Engineering Potential in Undomesticated Microbes With VECTOR.

Riley Williamson, Nicholas Dusek, Eglantina Lopez-Echartea, Megan K Townsend Ramsett, Barney A Geddes

Abstract read
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Riley WilliamsonDepartment of Microbiological Sciences, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0009-0002-1672-5885
Nicholas DusekCenter for Computationally Assisted Science and Technology, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0009-0002-2609-3121
Eglantina Lopez-EcharteaDepartment of Microbiological Sciences, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0000-0003-1871-9438
Megan K Townsend RamsettDepartment of Microbiological Sciences, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0009-0000-6069-820X
Barney A GeddesDepartment of Microbiological Sciences, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0000-0001-8309-2083

Funding

Foundation for Food and Agriculture Research FF-NIA21-0000000061mRichard and Linda Offerdahl Faculty Fellowship
6 · The paper itself

Abstract

Genetic engineering research has predominantly focused on well-characterised organisms like Escherichia coli and Bacillus subtilis, with methods that often fail to translate to other microorganisms. This limitation presents a significant challenge, particularly given the increasing isolation of large microbial collections through high-throughput culturomics. In response, we developed a scalable, high-throughput pipeline to evaluate the engineerability of diverse microbial community members we named VECTOR (Versatile Engineering and Characterisation of Transferable Origins and Resistance). We utilised a library of vectors with the Bacterial Expression Vector Archive (BEVA) architecture that included combinations of three antibiotic resistance genes and three broad host-range origins of replication (pBBR1, RK2 and RSF1010) or the restricted host-range R6K with an integrative mariner transposon. We tagged each vector with green fluorescent protein and a unique nucleotide barcode. The resulting plasmids were delivered en masse to libraries of undomesticated microbes from plant microbiomes in workflows designed to evaluate their ability to be engineered. Utilising OD

Indexed as

BacteriaGenetic EngineeringGenetic VectorsGreen Fluorescent ProteinsPlasmidsGreen Fluorescent Proteinsbarcodesgenetic engineeringplasmidsynthetic biology

Identifiers

PMID40785415
PMCPMC12336418

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.