Evidence map›Paper›PMID 40783454›Full record

ArticleCommunications chemistry2025

Quality Evaluation Based Simulation Selection (QEBSS) for analysis of conformational ensembles and dynamics of multidomain proteins.

Amanda E Sandelin, Ricky Nencini, Ekrem Yasar, Satoshi Fudo, Vassilis Stratoulias, Tommi Kajander, O H Samuli Ollila

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Amanda E SandelinInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0009-0005-0703-5446
Ricky NenciniDivision of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Helsinki, Finland.
Ekrem YasarDepartment of Biophysics, Faculty of Medicine, Erzincan Binali Yildirim University, Erzincan, Turkey.ORCID http://orcid.org/0000-0003-0575-7267
Satoshi FudoInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-9925-5131
Vassilis StratouliasDivision of Pharmacology and Pharmacotherapy, Faculty of Pharmacy, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-9724-6589
Tommi KajanderInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-5094-227X
O H Samuli OllilaInstitute of Biotechnology, University of Helsinki, Helsinki, Finland. samuli.ollila@vtt.fi.ORCID http://orcid.org/0000-0002-8728-1006

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multidomain proteins containing both folded and intrinsically disordered regions are crucial for biological processes, but characterizing their conformational ensembles and dynamics remains challenging. We introduce the Quality Evaluation Based Simulation Selection (QEBSS) protocol, which combines MD simulations with NMR-derived protein backbone

Identifiers

PMID40783454
PMCPMC12335556

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.