Evidence map›Paper›PMID 40783390›Full record

ArticleNature communications2025

Opposing regulation of the K63-linked polyubiquitination of RIPK3 by SMURF1 and USP5 in necroptosis.

Chi Hyun Hwang, Minhong Lee, Ju Won Kim, Young Woo Nam, Gyuho Hwang, Hyun Sung Ryu, Jinho Seo, Eun-Woo Lee, Hyuk Wan Ko, Jaewhan Song

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Deubiquitinases as Regulators and Therapeutic Targets in Vascular Diseases.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chi Hyun HwangDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Minhong LeeDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Ju Won KimDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Young Woo NamDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0008-1576-1749
Gyuho HwangDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Hyun Sung RyuDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Jinho SeoAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.
Eun-Woo LeeMetabolic Disease Research Center, KRIBB, Daejeon, Republic of Korea.ORCID http://orcid.org/0000-0002-5156-0003
Hyuk Wan KoDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Jaewhan SongDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea. jso678@yonsei.ac.kr.ORCID http://orcid.org/0000-0001-8152-9210

Funding

Ministry of Science, ICT and Future Planning (MSIP) 2021R1A6A3A1304015012Ministry of Science, ICT and Future Planning (MSIP) NRF-2015R1A3A206658133Ministry of Science, ICT and Future Planning (MSIP) NRF-2023K2A9A2A1005899911Ministry of Science, ICT and Future Planning (MSIP) RS-2024-00346972
6 · The paper itself

Abstract

Receptor-interacting protein kinase 3 (RIPK3), a key regulator of necroptosis, is modulated by ubiquitination through various E3 ligases and deubiquitinases. However, the effects of different polyubiquitination processes on RIPK3 and necroptosis remain unclear. Using a proteomic approach, we identify SMAD Ubiquitination Regulatory Factor 1 (SMURF1) and Ubiquitin-specific peptidase 5 (USP5) as crucial regulators of RIPK3 within the necrosome during necroptosis. SMURF1 facilitates K63 polyubiquitination of RIPK3 at lysine 55 and 363, inhibiting necrosome formation and necroptosis. SMURF1 depletion accelerates necroptosis, while the reintroduction of functional SMURF1 reverses this. Conversely, USP5 acts as a deubiquitinase, removing K63 ubiquitin chains and promoting necroptosis. Reducing SMURF1, using a RIPK3 mutant defective in SMURF1-mediated ubiquitination, or overexpressing USP5 enhances necroptosis in leukaemia cells, leading to reduced tumour growth in xenograft models treated with birinapant and emricasan. These findings highlight the opposing regulation of K63-linked polyubiquitination of RIPK3 by SMURF1 and USP5 in necroptosis.

Indexed as

NecroptosisReceptor-Interacting Protein Serine-Threonine KinasesUbiquitin-Protein LigasesUbiquitin-Specific ProteasesAnimalsCell Line, TumorHEK293 CellsHumansLysineMiceUbiquitinationLysineReceptor-Interacting Protein Serine-Threonine KinasesRIPK3 protein, humanSMURF1 protein, humanUbiquitin-Protein LigasesUbiquitin-Specific Proteases

Identifiers

PMID40783390
PMCPMC12335473

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.