Evidence map›Paper›PMID 40782352›Full record

ArticleCell reports2025

NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas.

Priyanka Sehgal, Ammar S Naqvi, Makenna Higgins, Jiageng Liu, Kyra Harvey, Julien Jarroux, Taewoo Kim, Berk Mankaliye, Pamela Mishra, Grace Watterson and 20 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Priyanka SehgalDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ammar S NaqviCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Makenna HigginsDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jiageng LiuDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA.
Kyra HarveyDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Julien JarrouxCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.
Taewoo KimCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.
Berk MankaliyeCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.
Pamela MishraDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Department of Biomedical & Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Grace WattersonCell and Molecular Biology Graduate Group, University of Pennsylvania, Philadelphia, PA, USA.
Justyn FineProgram in Molecular Biophysics, Johns Hopkins University, Baltimore, MD, USA.
Jacinta DavisDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Katharina E HayerDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Department of Biomedical & Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Annette CastroDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Adanna MogboVagelos Life Sciences Management Program, University of Pennsylvania, Philadelphia, PA, USA.
Charles DrummerDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Daniel MartinezPathology Core, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Mateusz P KoptyraCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Zhiwei AngDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kai WangDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA; Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Alvin FarrelDepartment of Biomedical & Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Mathieu Quesnel-VallieresDepartment of Genetics, University of Pennsylvania, Philadelphia, PA, USA.
Yoseph BarashDepartment of Genetics, University of Pennsylvania, Philadelphia, PA, USA.
Jamie B SpanglerProgram in Molecular Biophysics, Johns Hopkins University, Baltimore, MD, USA; Department of Chemical & Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
Jo Lynne RokitaCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Adam C ResnickCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hagen U TilgnerCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA; Helen and Robert Appel Alzheimer's Disease Research Institute, Weill Cornell Medicine, New York, NY, USA.
Thomas De RaedtDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Daniel J PowellDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Andrei Thomas-TikhonenkoDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Cell and Molecular Biology Graduate Group, University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA. Electronic address: andreit@pennmedicine.upenn.edu.

Funding

IMMUNOBIOLOGY OF NORMAL AND NEOPLASTIC LYMPHOCYTEST32CA009140 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Malay Haldar, WARREN S PEAR · 1985 to 2026
$16.1M
RED CELL HEMOGLOBIN RESEARCH TRAINING PROGRAMT32HL007150 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI STELLA T CHOU, Mortimer Poncz · 1985 to 2026
$7.4M
Training In Tumor VirologyT32CA115299 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2006 to 2021
$4.7M
Cassette exons in neoplastic pro-B-cells: implications for immunotherapyU01CA232563 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI BARASH, YOSEPH, THOMAS-TIKHONENKO, ANDREI · 2018 to 2022
$3.5M
Dual-targeted DOTA CAR T cells with image-guided monitoring for solid tumor treatmentUG3CA290451 · NCI · UNIVERSITY OF PENNSYLVANIA · PI FARWELL, MICHAEL DAVID, POWELL, DANIEL J. · 2024 to 2025
$2.9M
Novel bioinformatics methods to detect DNA and RNA modifications using Nanopore long-read sequencingR01HG013359 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI Kai Wang · 2023 to 2026
$2.8M
Quantitative control of CAR T cells via image-guided delivery and monitoringR01EB026892 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI FARWELL, MICHAEL DAVID, POWELL, DANIEL J. · 2018 to 2021
$2.6M
Multiome measurements connecting transcription start sites at single-nucleotide resolution, DNA methylation and open chromatin status to splicing outcome across single cells in health and diseaseR35GM152101 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HAGEN ULRICH TILGNER · 2024 to 2026
$1.7M
Discovery of neoepitope immunotherapeutic targets in diffuse pediatric high-grade gliomasR03OD036498 · OD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROKITA, JO LYNNE · 2023 to 2023
$356k
Long-read, single-cell RNA sequencing of high-risk neuroblastoma samplesR03CA293992 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI Andrei Thomas-Tikhonenko · 2025 to 2026
$356k
NCI NIH HHS R03 CA293992NCI NIH HHS T32 CA009140NCI NIH HHS T32 CA115299NCI NIH HHS U01 CA232563NCI NIH HHS UG3 CA290451NHGRI NIH HHS R01 HG013359NHLBI NIH HHS T32 HL007150NIBIB NIH HHS R01 EB026892NIGMS NIH HHS R35 GM152101NIH HHS R03 OD036498
6 · The paper itself

Abstract

To overcome the paucity of known tumor-specific surface antigens in pediatric high-grade glioma (pHGG), we contrasted splicing patterns in pHGGs and normal brain samples. Among alternative splicing events affecting extracellular protein domains, the most pervasive alteration was the skipping of ≤30-nt-long exons. Several of these skipped microexons mapped to L1-immunoglobulin cell adhesion molecule (IgCAM) family members, such as neuronal CAM (NRCAM). Bulk and single-nuclei short- and long-read RNA-seq revealed uniform skipping of NRCAM microexons 5 and 19 in virtually every pHGG sample. Importantly, the Δex5Δex19 (but not the full-length) NRCAM proteoform was essential for pHGG cell migration and invasion in vitro and tumor growth in vivo. We developed a monoclonal antibody selective for Δex5Δex19 NRCAM and demonstrated that "painting" pHGG cells with this antibody enables killing by T cells armed with an FcRI-based universal immune receptor. Thus, pHGG-specific NRCAM and possibly other L1-IgCAM proteoforms are promising and highly selective targets for adoptive immunotherapies.

Indexed as

Brain NeoplasmsExonsGliomaAlternative SplicingAnimalsAntibodies, MonoclonalCell Line, TumorCell MovementChildHumansMiceNeoplasm GradingProtein IsoformsAntibodies, MonoclonalProtein Isoformsalternative splicingantibodiescell adhesion moleculesCP: CancerCP: ImmunologyglioblastomagliomaimmunotherapymicroexonsmRNA processing

Identifiers

PMID40782352
PMCPMC12456627

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.