Evidence map›Paper›PMID 40781675›Full record

ArticleBMC biology2025

Pharmacomodulation of G-quadruplexes in long non-coding RNAs dysregulated in colorectal cancer.

Shubham Sharma, Jérémie Mitteaux, Angélique Pipier, Marc Pirrotta, Marie-José Penouilh, David Monchaud, Bhaskar Datta

Abstract read
In one paragraph

Article in BMC biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shubham SharmaDepartment of Biological Sciences and Engineering, Indian Institute of Technology Gandhinagar, Gandhinagar, Gujarat, 382055, India.ORCID http://orcid.org/0000-0001-6658-7762
Jérémie MitteauxInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), Université Bourgogne Europe (UBE), CNRS UMR6302, Dijon, 21000, France.
Angélique PipierInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), Université Bourgogne Europe (UBE), CNRS UMR6302, Dijon, 21000, France.
Marc PirrottaInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), Université Bourgogne Europe (UBE), CNRS UMR6302, Dijon, 21000, France.
Marie-José PenouilhInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), Université Bourgogne Europe (UBE), CNRS UMR6302, Dijon, 21000, France.
David MonchaudInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), Université Bourgogne Europe (UBE), CNRS UMR6302, Dijon, 21000, France. david.monchaud@cnrs.fr.
Bhaskar DattaDepartment of Biological Sciences and Engineering, Indian Institute of Technology Gandhinagar, Gandhinagar, Gujarat, 382055, India. bdatta@iitgn.ac.in.

Funding

Agence Nationale de la Recherche ANR-22-CE44-0039-01European Molecular Biology Organization EMBO/9906Gujarat State Biotechnology Mission GSBTM/JD(R&D)/626/22-23/00006262Ligue Contre le Cancer AAPEAC2022.LCC/VG
6 · The paper itself

Abstract

backgroundNon-coding RNAs (ncRNAs) in human cells constitute a substantial portion of the transcriptome but do not lead to protein synthesis. Among them, long non-coding RNAs (lncRNAs, > 200 nucleotides long) are fascinating in their ability to orchestrate critical cellular functions that govern cell development, differentiation, and metabolism. Therefore, the dysregulation of lncRNAs has been linked with several diseases, chiefly cancers.

resultsWe focused here on colorectal cancer (CRC), the second-highest cause of mortalities related to cancer worldwide, and more particularly on three lncRNAs, i.e., LINC01589, MELTF-AS1, and UXT-AS1, known to be dysregulated in CRC. We identified a vulnerability in these lncRNAs that could be exploited from a therapeutic point of view: a part of their sequence folds into a secondary structure referred to as G-quadruplex (G4), which is suspected to play active roles in the lncRNA functions. We demonstrate here that these sequences do fold into G4s both in vitro and in CRC cells, and that these G4s can be modulated using PhpC, a prototype molecule for destabilizing G4s.

conclusionWe describe an innovative anticancer strategy that fully abides by the rules of chemical biology. We indeed modulate the formation of G4s in cells using ad hoc molecular tools in the aim of disturbing the homeostasis and inner functioning of lncRNAs. By exploiting cellular outcomes, we infer how this pharmacomodulation affects CRC biology and, beyond this, the fate of CRC cells owing to the flawed repertoire of correction and/or compensatory mechanisms in cancer cells.

Indexed as

Colorectal NeoplasmsGene Expression Regulation, NeoplasticG-QuadruplexesRNA, Long NoncodingCell Line, TumorHumansRNA, Long NoncodingColorectal cancerG-quadruplexLigandsLong non-coding RNAMolecular helicases

Identifiers

PMID40781675
PMCPMC12333089

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.